New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3120793 =	41 (0.950)	5 (0.120)	5/244	NT	11.7%	coding (694/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3120810 =	36 (0.870)					coding (677/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase

AAAACCGTGACTTCGTGCTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGC  >  NC_002947/3120645‑3120941                                                                                                                                                     |                                                                                                                                                     caggcttcgtggacacgcccctgacccgtcgcaacgatttccccatgccacagctgtggtctgcgcagcgtgccgcccggcatatcgccaggcgcctgcccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttgc                                                                                                                                                     >  1:409985‑M1/149‑150 (MQ=255) aaaaCCGTGACTTCGTGCTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAgc                                                                                                                                                     <  1:1029414/150‑1 (MQ=255) aaaaCCGTGACTTCGTGCTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAgc                                                                                                                                                     <  2:691549/150‑1 (MQ=255)   ggcttcgtggacacgcccctgacccgtcgcaacgatttccccatgccacagctgtggtctgcgcagcgtgccgcccggcatatcgccaggcgcctgcccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttgcgc                                                                                                                                                   >  2:93923‑M1/147‑150 (MQ=255)         gACTTCGTGCTTGCGTGACAGCAAACATCGGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAg                                                                                                                                             <  1:840537/150‑1 (MQ=255)            ttCGTGCTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAg                                                                                                                                          >  2:453687/1‑150 (MQ=255)            ttCGTGCTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAg                                                                                                                                          >  2:135582/1‑150 (MQ=255)            ttCGTGCTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAg                                                                                                                                          >  2:769641/1‑150 (MQ=255)               gTGCTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGgcg                                                                                                                                       >  1:196958/1‑150 (MQ=255)                     gCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTCGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAacac                                                                                                                                 <  2:1004939/150‑1 (MQ=255)                        tGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCaa                                                                                                                              <  1:769641/150‑1 (MQ=255)                         gACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAg                                                                                                                             <  1:135582/150‑1 (MQ=255)                         gACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAg                                                                                                                             <  1:433791/150‑1 (MQ=255)                                aaTGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATAATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGaaaa                                                                                                                      <  2:1047125/150‑1 (MQ=255)                                       gcAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCggg                                                                                                               <  1:272423/150‑1 (MQ=255)                                           gTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAg                                                                                                           >  2:980716/1‑150 (MQ=255)                                           gTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAg                                                                                                           >  1:573377/1‑150 (MQ=255)                                            tCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGt                                                                                                          >  2:195537/1‑150 (MQ=255)                                                 cccGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGAtt                                                                                                     >  1:291406/1‑150 (MQ=255)                                                        tGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAggg                                                                                              <  2:405560/150‑1 (MQ=255)                                                          ccACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGATAATACCGGGGAAGTTGATTTCCAggggg                                                                                            <  1:309629/150‑1 (MQ=255)                                                                     gatTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGAGCAGGCGCGAAGGCTGCGCCCCGAGCAGTCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAg                                                                                 <  1:980716/150‑1 (MQ=255)                                                                       ttGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGgc                                                                               >  2:895451/1‑150 (MQ=255)                                                                       ttGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGgc                                                                               <  1:656615/150‑1 (MQ=255)                                                                       ttGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCAACGCGCAGGCGAGCGCGCAGCGCCCCGACCAGGCCCAAGAGCGCGTGGTGGAGGGTGGGGAAGGTGATTTCCAGGGGGCGGCCGGGCAGgc                                                                               <  2:402952/150‑1 (MQ=255)                                                                                gCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGa                                                                      >  2:448099/1‑150 (MQ=255)                                                                                    ggATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATg                                                                  >  1:342718/1‑150 (MQ=255)                                                                                    ggATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATg                                                                  >  1:93919/1‑150 (MQ=255)                                                                                          tcatTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGggc                                                            >  2:110866/1‑150 (MQ=255)                                                                                            atTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGggcgg                                                          <  2:49812/150‑1 (MQ=255)                                                                                               cctgcccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAACACCAAg                                                                                                                             >  2:585670‑M1/55‑80 (MQ=255)                                                                                               cctgcccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAACACCAAg                                                                                                                             <  1:585670‑M1/26‑1 (MQ=255)                                                                                                cTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACg                                                      >  1:484191/1‑150 (MQ=255)                                                                                                    tCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTgc                                                  <  2:1124771/150‑1 (MQ=255)                                                                                                    ccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAac                                                                                                                                   >  1:325009‑M1/50‑69 (MQ=255)                                                                                                    ccggccgccccctggaaatcaacttccccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAac                                                                                                                                   <  2:325009‑M1/20‑1 (MQ=255)                                                                                                      aTGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCGGAGCAGGCGCAac                                                                                                                                   >  1:412158/1‑67 (MQ=255)                                                                                                      aTGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAac                                                                                                                                   <  2:412158/67‑1 (MQ=255)                                                                                                       tGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCa                                               <  2:342718/150‑1 (MQ=255)                                                                                                          cGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGAc                                            <  1:453687/150‑1 (MQ=255)                                                                                                                          ccAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATgg                            >  1:997646/1‑150 (MQ=255)                                                                                                                          ccAGCGCAAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATgg                            >  1:997408/1‑150 (MQ=255)                                                                                                                           cAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGACCGCTGCGCATACCACAGCTCTGGCATggg                           >  2:510862/1‑150 (MQ=255)                                                                                                                              cccggtcttttcaccttggtgttGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGaa                        <  1:620506‑M1/127‑1 (MQ=255)                                                                                                                                ccAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAAt                      >  2:167231/1‑150 (MQ=255)                                                                                                                                 caggcgcaggcgCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATc                     >  2:382084/1‑150 (MQ=255)                                                                                                                                  aggcgcaggcgcGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCg                    >  1:940456/1‑150 (MQ=255)                                                                                                                                    gcgcaggcgcGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGtt                  <  1:52363/150‑1 (MQ=255)                                                                                                                                        aggcgcGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGa              >  1:413584/1‑150 (MQ=255)                                                                                                                                               cgGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCa       <  1:895451/150‑1 (MQ=255)                                                                                                                                                 ggCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAgg     <  1:110866/150‑1 (MQ=255)                                                                                                                                                   ttGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAgggg   >  2:620506‑M1/3‑150 (MQ=255)                                                                                                                                                    aGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGc  >  2:854853/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AAAACCGTGACTTCGTGCTTGCGTGACAGCAAATGGGCGCAGGTCAGCCCCGCGATGCCACTGCCGATGATTGCTATACGCATGGATCATCATTCCTGTTCATGACGGGCGAGGCGTTGGCCCAGCGCCAGGCGCAGGCGCGCGGGCAGCGCCCCGAGCAGGCGCAACACCAAGGTGAAAAGACCGGGGAAGTTGATTTCCAGGGGGCGGCCGGGCAGGCGCCTGGCGATATGCCGGGCGGCACGCTGCGCAGACCACAGCTGTGGCATGGGGAAATCGTTGCGACGGGTCAGGGGC  >  NC_002947/3120645‑3120941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.