New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3364786 =	29 (0.670)	4 (0.100)	4/240	NT	12.8%	coding (483/879 nt)	PP_2961	LysR family transcriptional regulator
	?	NC_002947	3364814 =	27 (0.660)					coding (455/879 nt)	PP_2961	LysR family transcriptional regulator

TGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAA  >  NC_002947/3364642‑3364930                                                                                                                                                 |                                                                                                                                                 gctgtgcatagcgcccctgatcggggcttttctacagcgccaccccgatgtgcagattgacctgcgcctgaacgattacaacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTg                                                                                                                                               <  1:1117135‑M1/4‑1 (MQ=255) gctgtgcatagcgcccctgatcggggcttttctacagcgccaccccgatgtgcagattgacctgcgcctgaacgattacaacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTg                                                                                                                                               >  2:1117135‑M1/145‑148 (MQ=255) gctgtgcatagcgcccctgatcggggcttttctacagcgccaccccgatgtgcagattgacctgcgcctgaacgattacaacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGt                                                                                                                                             <  1:14222‑M1/6‑1 (MQ=255)   cTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGc                                                                                                                                           >  1:1059208/1‑150 (MQ=255)        ccACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAgg                                                                                                                                      >  2:910133/1‑150 (MQ=255)        ccACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAgg                                                                                                                                      <  1:743996/150‑1 (MQ=255)         cACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGACCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAggg                                                                                                                                     <  1:752742/150‑1 (MQ=255)              tGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACg                                                                                                                                >  2:53085/1‑150 (MQ=255)                ggTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGc                                                                                                                              <  1:675344/150‑1 (MQ=255)                  tGAAGTGCCAGAGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGcca                                                                                                                            >  1:480540/1‑150 (MQ=255)                              ggTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGc                                                                                                                >  2:1027350/1‑150 (MQ=255)                                tCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGctc                                                                                                              <  1:214900/150‑1 (MQ=255)                                         tCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGGTCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCaccaaa                                                                                                     >  2:14222/1‑150 (MQ=255)                                                agGTGAAGACGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGACATGGCGATCGAGCTAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGc                                                                                              <  2:607555/150‑1 (MQ=255)                                                         cGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCa                                                                                     <  2:719862/150‑1 (MQ=255)                                                          gATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAg                                                                                    <  1:53085/150‑1 (MQ=255)                                                          gATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAg                                                                                    >  1:372094/1‑150 (MQ=255)                                                               aGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGa                                                                               >  1:379942/1‑150 (MQ=255)                                                                        cTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCTGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCa                                                                      <  1:910133/150‑1 (MQ=255)                                                                                aacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGTGCCCAGGGGCACGGccacc                                                                                                                          <  2:814072‑M1/25‑1 (MQ=255)                                                                                aacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGTGCCCAGGGGCACGGccacc                                                                                                                          >  1:814072‑M1/66‑90 (MQ=255)                                                                                        cTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGtt                                                      >  2:91267/1‑150 (MQ=255)                                                                                         tCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTg                                                     <  2:410981/150‑1 (MQ=255)                                                                                         ctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCa                                                                                                          >  1:652391‑M1/57‑97 (MQ=255)                                                                                             gTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAAt                                                 <  1:226886/150‑1 (MQ=255)                                                                                              tggctggcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCTTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATc                                                >  2:764081/1‑150 (MQ=255)                                                                                                  tggcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTc                                            >  2:642378/1‑150 (MQ=255)                                                                                                    gcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAg                                          <  1:91267/150‑1 (MQ=255)                                                                                                            gATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGt                                  <  2:480540/150‑1 (MQ=255)                                                                                                                               agcaTAGACTCGCCTTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTg               <  1:764081/150‑1 (MQ=255)                                                                                                                                gcaTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTgg              <  2:402059/150‑1 (MQ=255)                                                                                                                                gcaTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCCCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTgg              <  1:897319/150‑1 (MQ=255)                                                                                                                                  aTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCac                                                                                                         >  2:59567/1‑57 (MQ=255)                                                                                                                                  aTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCac                                                                                                         <  1:59567/57‑1 (MQ=255)                                                                                                                                    tgaagagcgagggGCTGGTGGCCGTGCCCCTGGGCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAg                                                               >  2:652391‑M1/14‑97 (MQ=255)                                                                                                                                        tCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTAGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAg      >  1:350939/1‑150 (MQ=255)                                                                                                                                            cGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGaaaa  >  1:1080046/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                 TGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAA  >  NC_002947/3364642‑3364930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.