| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3947984 | 18 (0.420) | 3 (0.090) | 3/198 | NT | 14.3% | coding (109/1797 nt) | PP_3483 | type II secretion system protein |
| ? | NC_002947 | = 3948013 | 22 (0.650) | coding (80/1797 nt) | PP_3483 | type II secretion system protein | |||||
AGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCT > NC_002947/3947840‑3948131 | cgatctCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CAt < 1:654244/145‑1 (MQ=255) tCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAg < 1:832388/150‑1 (MQ=255) gggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCGCGTCAGTGGCTTGCAGACGGGCCTGGGCCCGGAGGCCGCGGGGGGAGGCGGAAATTTTTGCTGGGCCCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CCTcacatcg > 2:654244/1‑147 (MQ=255) tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTggg > 2:899106/1‑150 (MQ=255) aggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACa < 1:367694/150‑1 (MQ=255) cGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTGTTCGCGTGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcc > 1:690490‑M2/1‑148 (MQ=255) cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgtgg < 1:286782‑M2/150‑8 (MQ=255) gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGGCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgg < 2:1028828‑M1/150‑43 (MQ=255) tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgtgggagcggg > 2:286782‑M2/1‑136 (MQ=255) cgcTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgc > 1:720339‑M2/1‑127 (MQ=255) gggCGTGGGCGAGGAGGTCGCGGCTGTAGGCGGAATGGTTTGCTGTGTTCTGCGCGGGCATGCCCGCTCCCACAGGTA‑CAGCACAGGTCTGTGGGCTGCATCCATCCTCTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTg < 1:339472/150‑1 (MQ=37) gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgg > 2:713303‑M1/1‑76 (MQ=255) gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgg < 1:713303‑M1/112‑37 (MQ=255) gCCTGGGCCGGGAGGTCGCGGGGGTAGGCGGAAATTTCTGCTGGGTTCGTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCa < 1:650739/150‑1 (MQ=255) cTGGGCCAGGAGGGCGAGTCATGAGGCGGAAAGGGTTGCTGGGTTCTCCGCGGGCCTGCCCCCTCCCACAGGTA‑TATCCCAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGa < 1:899106/150‑1 (MQ=255) ggggCAGGCGGAACTGTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTG‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa < 2:841769/150‑1 (MQ=255) gggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAAt > 1:1103601/1‑150 (MQ=255) aGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCACGC‑CCCAAATGCAGTTTCACAGGTGTGTGGGCTGGATACATCCTGTGGGAGTGTGGAACCCCGCGAAAACGTCGGTGCAGGCTTTGCAGAGTCCGGGGTTGCATCGAATGCtt > 1:862354/1‑150 (MQ=255) cGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTg < 2:1103601/150‑1 (MQ=255) tcttcGCGGGCATGCCCGCTCCGAGAGGGA‑CATTACAGCTCTGTGGGCTGCATACATCCAGAGAAAGCGGGAACGCCCGCGAAGACGCCGGCCTAGGCTTGGCAGATTCAGGGCATGCATCGAGCGCTTCTGGGACGGTCGGCGAccagg > 2:143958/1‑146 (MQ=255) ttcGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgtgg > 1:976537‑M2/1‑55 (MQ=255) ttcGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgtgg < 2:976537‑M2/62‑8 (MQ=255) gcgGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcg > 1:720339‑M1/1‑23 (MQ=255) gCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgt > 1:468988‑M2/1‑48 (MQ=255) gCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgt < 2:468988‑M2/53‑6 (MQ=255) aTGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTg < 1:85395/82‑1 (MQ=255) aTGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTg > 2:85395/1‑82 (MQ=255) cccGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcga > 2:286782‑M1/1‑14 (MQ=255) ccGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccagccccgtctgcaagccactgacgagcgcctgctcgac < 2:1028828‑M2/150‑109 (MQ=255) ccGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc > 1:520684/1‑106 (MQ=255) ccGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc < 2:520684/106‑1 (MQ=255) ccGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg > 2:1020601/1‑150 (MQ=255) ccACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcctg < 1:286782‑M1/150‑144 (MQ=255) ccACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaa > 1:976537‑M1/1‑7 (MQ=255) ccACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaa < 2:976537‑M1/62‑56 (MQ=255) ccACAGGTA‑CATCCCAGGTCTGTGGGCTGCATACATCCTGTGGGATCGGTCATGCACGCGACGCCGTCGGTGCAGGCTTTTAAGATTCCGAGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggct > 2:486915/1‑150 (MQ=255) ccACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggccc > 2:713303‑M2/1‑36 (MQ=255) ccACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggccc < 1:713303‑M2/112‑77 (MQ=255) acaGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgc < 2:468988‑M1/53‑49 (MQ=255) acaGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgc > 1:468988‑M1/1‑5 (MQ=255) ggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcacgcgaacaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcctggaacg > 1:690490‑M1/1‑2 (MQ=255) | AGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTA‑CATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCT > NC_002947/3947840‑3948131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |