| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4340118 | 5 (0.120) | 8 (0.250) | 6/186 | NT | 73.9% | intergenic (+59/‑272) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| ? | NC_002947 | = 4340134 | 2 (0.060) | intergenic (+75/‑256) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein | |||||
CCTGGGGCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTG > NC_002947/4339969‑4340267 | ttgtaggtgccggcctgcagactcaaggtctacgggatatcatattatggtattccaagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCg < 1:695079‑M1/34‑1 (MQ=255) tGGGGCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtc > 1:916731‑M1/1‑148 (MQ=255) ggggCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAgg < 2:93325/150‑1 (MQ=255) aaTACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtcggtggtgtcaccctc < 2:916731‑M1/150‑18 (MQ=255) aaTACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGAc > 2:891626‑M2/1‑149 (MQ=255) aaTACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGAc > 2:939893‑M2/1‑149 (MQ=255) tACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGACTCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGAcgc > 1:526490‑M2/1‑147 (MQ=255) gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtcggtggtgtcaccctcgcattcgcgg < 1:984084‑M1/150‑28 (MQ=255) gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtcggtggtgtcaccctcgcattcgcgg < 2:974067‑M1/150‑28 (MQ=255) gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCAGCGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtcggtggtgtcaccctcgcattcgcgg < 1:800472‑M1/150‑28 (MQ=255) gCTGGCGGGCTATGAGCTGGAGGTGGGGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGAcgcattcgcgg > 2:412713‑M2/1‑139 (MQ=255) gggCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTcgcattcgcgggtaaac > 1:798982‑M2/1‑133 (MQ=255) gggCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGGTGTCACCCTcgcattcgcgggtaaac > 2:882520‑M2/1‑133 (MQ=255) gggCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGAcgcattcgcgggtaaac > 2:777177‑M2/1‑133 (MQ=255) ttccaagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCgg < 1:662947‑M1/61‑1 (MQ=255) ttccaagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCgg > 2:662947‑M1/65‑125 (MQ=255) caagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCgg < 1:485519‑M1/61‑1 (MQ=255) caagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCgg > 2:485519‑M1/62‑122 (MQ=255) agagCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa > 2:292859/1‑95 (MQ=255) agagCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa < 1:292859/95‑1 (MQ=255) gattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCAtt > 1:598944‑M1/59‑114 (MQ=255) gattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCAtt < 2:598944‑M1/56‑1 (MQ=255) tCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTATCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtcggtggtgtcaccctcgcattcgcg > 2:1009644‑M1/1‑88 (MQ=255) tCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTATCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtcggtggtgtcaccctcgcattcgcg < 1:1009644‑M1/114‑27 (MQ=255) gTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtcggtggtgtcaccctcgcattcgcgg > 2:599048‑M1/1‑84 (MQ=255) gTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGtcggtggtgtcaccctcgcattcgcgg < 1:599048‑M1/111‑28 (MQ=255) gccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCgg > 1:219418‑M1/31‑91 (MQ=255) gccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCgg < 2:219418‑M1/61‑1 (MQ=255) cTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAg < 1:1120745/65‑1 (MQ=255) cTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAg > 2:1120745/1‑65 (MQ=255) acacaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGAcaccac < 2:519179/68‑1 (MQ=255) acacaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGAcaccac > 1:519179/1‑68 (MQ=255) acaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGAcaccac < 1:739478/66‑1 (MQ=255) acaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGAcaccac > 2:739478/1‑66 (MQ=255) gCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa > 2:1015299/1‑50 (MQ=255) gCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa < 1:1015299/50‑1 (MQ=255) gTTTACCCGCGAATGCGtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagccc > 2:777177‑M1/1‑17 (MQ=255) gTTTACCCGCGAATGCGagggtgacaccaccgacgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagccc > 1:798982‑M1/1‑17 (MQ=255) gTTTACCCGCGAATGCGagggtgacaccaccgacgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagccc > 2:882520‑M1/1‑17 (MQ=255) TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGAt > 1:707649‑M1/1‑93 (MQ=255) TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGAt < 2:707649‑M1/93‑1 (MQ=255) ccGCGAATGCGtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgccccacctccagctcatagcccgccagc > 2:412713‑M1/1‑11 (MQ=255) ccGCGAATGCGAGGGTGACACCACCGAcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatcgctgggtcgaacgggatgctctgcaccacctccagctcatagcccgccagc < 1:800472‑M2/150‑124 (MQ=255) ccGCGAATGCGAGGGTGACACCACCGAcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagcccgccagc < 2:974067‑M2/150‑124 (MQ=255) ccGCGAATGCGAGGGTGACACCACCGAcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagcccgccagc < 1:984084‑M2/150‑124 (MQ=255) ccGCGAATGCGAGGGTGACACCACCGAcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaac < 1:599048‑M2/111‑85 (MQ=255) ccGCGAATGCGAGGGTGACACCACCGAcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaac > 2:599048‑M2/1‑27 (MQ=255) ccGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGAGGACTGCTAGCCGGAAGCAGTAAAAATAGCACCAAAATCTGGTAATACCATAATAGGATATAACGTAgcc > 2:851869/1‑148 (MQ=19) CCGNGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAc < 2:695079‑M1/150‑1 (MQ=255) CCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAc < 2:992670‑M1/150‑1 (MQ=255) CCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAc < 2:49784‑M1/150‑1 (MQ=255) cgcgAATGCGAGGGTGACACCACCGAcgcattcgcgggtaaacccgctcctacagggccccgataaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacggga > 2:1009644‑M2/1‑26 (MQ=255) cgcgAATGCGAGGGTGACACCACCGAcgcattcgcgggtaaacccgctcctacagggccccgataaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacggga < 1:1009644‑M2/114‑89 (MQ=255) GCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGgcccc < 2:348232‑M1/60‑2 (MQ=255) GCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGgcccc > 1:348232‑M1/1‑59 (MQ=255) GCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCt < 2:92059‑M1/150‑1 (MQ=255) gCGtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagagtcccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagcccgccagccccgcgta > 1:526490‑M1/1‑3 (MQ=255) gtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagcccgccagccccgcgtatt > 2:891626‑M1/1‑1 (MQ=255) gtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagcccgccagccccgcgtatt > 2:939893‑M1/1‑1 (MQ=255) gAGGGTGACACCACCGAcgcattcgcgggtaaacccgctcctacagggccccgctaaatcaattgcttgtgtgttctcagccatccatccccgggtcgaacgggatgctctgcaccacctccagctcatagcccgccagccccgcgtatt < 2:916731‑M2/150‑134 (MQ=255) | CCTGGGGCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTG > NC_002947/4339969‑4340267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |