New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4599330	32 (0.740)	5 (0.120)	5/240	NT	13.5%	coding (525/3627 nt)	PP_4071	membrane protein
	?	NC_002947	= 4599354	34 (0.830)					coding (501/3627 nt)	PP_4071	membrane protein

CACAGTTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCG  >  NC_002947/4599184‑4599479                                                                                                                                                   |                                                                                                                                                      cacaGTTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGACCAGCGAATCTGCGGGCGCTTTGCGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAg                                                                                                                                                    >  1:689347/1‑150 (MQ=255)   caGTTTGGCTGGGGTTCCAGACGTTACCGAAGACTCTACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGc                                                                                                                                                  <  1:302873/150‑1 (MQ=255)      tttGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAg                                                                                                                                               >  2:288715/1‑150 (MQ=255)            ttGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTg                                                                                                                                         <  1:782966/150‑1 (MQ=255)                    cAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTggcc                                                                                                                                 >  2:428735/1‑150 (MQ=255)                              cGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGcgccggga                                                                                                                       <  1:839519‑M2/150‑9 (MQ=255)                               gAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGcc                                                                                                                      >  2:1033164/1‑150 (MQ=255)                                     tCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGcc                                                                                                                >  1:740022/1‑150 (MQ=255)                                     ccaACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCCATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCCAGCGCAGGCGCTCGCCTAccccgtggggtggtg                                                                                                                >  2:369227‑M2/2‑135 (MQ=255)                                       aaCGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCAACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCtt                                                                                                              <  1:292672/150‑1 (MQ=255)                                          gTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTc                                                                                                           >  1:1060025/1‑150 (MQ=255)                                                 gAGTGACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCgg                                                                                                    <  2:515675/150‑1 (MQ=255)                                                 gAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGGCTTTCTCGTGCCTGCGCCTTGTCGATGCgg                                                                                                    <  1:578299/150‑1 (MQ=255)                                                   gTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGt                                                                                                  >  1:1071413/1‑150 (MQ=255)                                                      aCTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCaa                                                                                               >  1:822185/1‑150 (MQ=255)                                                       cTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAAc                                                                                              <  1:288715/150‑1 (MQ=255)                                                          cccAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGGCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCCATGCGGGTCAACgcg                                                                                           >  2:19250/1‑148 (MQ=255)                                                           ccAGCGAAGCTTCGGGGGCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTCGGCGAGCGCCTGCGCTGGCTGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACgaga                                                                                          <  2:438197/150‑1 (MQ=39)                                                             aGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGaaa                                                                                        >  2:1064312/1‑150 (MQ=255)                                                              gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGt                                                                                                            >  2:255381/1‑129 (MQ=255)                                                              gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGt                                                                                                            <  1:255381/129‑1 (MQ=255)                                                              gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTAccccgtggggtggt                                                                                                                 >  1:779159‑M2/1‑110 (MQ=255)                                                              gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTAccccgtggggtggt                                                                                                                 <  2:779159‑M2/124‑15 (MQ=255)                                                                gAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACtt                                                                                     <  1:1064312/150‑1 (MQ=255)                                                                                      tGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGccggccagcgcaggcgctcgcctaccccgtg                                                                                                                        <  2:1035471‑M1/93‑32 (MQ=255)                                                                                      tGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGccggccagcgcaggcgctcgcctaccccgtg                                                                                                                        >  1:1035471‑M1/1‑62 (MQ=255)                                                                                                       gggTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGgcctgc                                              <  2:884787/150‑1 (MQ=255)                                                                                                       gggTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGgcctgc                                              <  2:1071413/150‑1 (MQ=255)                                                                                                            gatgatCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGgc                                         >  1:955506/1‑150 (MQ=255)                                                                                                            gatgatCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCNGgc                                         <  2:702358/150‑1 (MQ=255)                                                                                                                 tCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCa                                    <  2:822185/150‑1 (MQ=255)                                                                                                                       cctcatTGCTCTTCCACCTCCCGCCGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGACACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTCCCTGTCGCCCAGCACGa                              <  2:280756/148‑1 (MQ=255)                                                                                                                         tcatTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAgg                            <  2:928848/150‑1 (MQ=255)                                                                                                                              gCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGACCAAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCa                       <  1:357075/150‑1 (MQ=255)                                                                                                                                tGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACg                     <  2:1060025/150‑1 (MQ=255)                                                                                                                                tGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACg                     >  1:322095/1‑150 (MQ=255)                                                                                                                                     caccacCCCACGGGGtaggcgagcgcctgcgctggcctaccccgtggggtggtggatcagcaatgatgcggtgatcatggacccgcccggtgcctttatcagccagaacggccccgcagattcgctgggcagtgactccactgacgttgg                >  2:369227‑M1/1‑15 (MQ=255)                                                                                                                                      accaccCCACGGGGtaggcgagcgcctgcgctggccggccccgtggggtggtggatcagcaatgatgcggtgatcatcgacccgcccggtgcctttatcagccagaacggccccgcagattcgc                                         >  1:779159‑M1/1‑14 (MQ=255)                                                                                                                                      accaccCCACGGGGtaggcgagcgcctgcgctggccggccccgtggggtggtggatcagcaatgatgcggtgatcatcgacccgcccggtgcctttatcagccagaacggccccgcagattcgc                                         <  2:779159‑M1/124‑111 (MQ=255)                                                                                                                                       ccaccCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTgg                                          <  1:651776/122‑1 (MQ=255)                                                                                                                                       ccaccCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTgg                                          >  2:651776/1‑122 (MQ=255)                                                                                                                                          ccccACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTa           <  1:225288/150‑1 (MQ=255)                                                                                                                                          ccccACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCATGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTa           >  1:1096186/1‑150 (MQ=255)                                                                                                                                            tcccggcGccggccagcgcaggcgctcgcctaccccgtggggtggtggatcagcaatgatgcggtgatcatcgacccgcccggtgcctttatcagccagaacggccccgcagattcgctgggcagtgactccactgacgttgagtcttcg         <  1:839519‑M1/147‑143 (MQ=255)                                                                                                                                             cACGGGGTAGGCGAGCGCCTGCGCTGGCCGGccccgtggggtggtggatcagcaatgatgcggtgatcatcgacccgcccggtgcctttatca                                                                 <  2:1035471‑M2/93‑63 (MQ=255)                                                                                                                                             cACGGGGTAGGCGAGCGCCTGCGCTGGCCGGccccgtggggtggtggatcagcaatgatgcggtgatcatcgacccgcccggtgcctttatca                                                                 >  1:1035471‑M2/1‑31 (MQ=255)                                                                                                                                                   gTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGcgcgcg  >  2:220006/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                      CACAGTTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCG  >  NC_002947/4599184‑4599479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.