| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5288471 | 14 (0.320) | 5 (0.150) | 5/194 | NT | 30.6% | intergenic (‑104/+80) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| ? | NC_002947 | = 5288505 | 12 (0.360) | intergenic (‑138/+46) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B | |||||
GATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCG > NC_002947/5288323‑5288618 | gATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACaa < 2:499228/150‑1 (MQ=255) gACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTa < 1:780402/150‑1 (MQ=255) tACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCt < 1:771392/150‑1 (MQ=255) aCCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGGCAAGTCCAGCGGCGCCTGTATCGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 2:571469/150‑1 (MQ=255) aCCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 2:967745/150‑1 (MQ=255) cttcGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGCCACGCGGCGCCTGCCAGACAACAATCGTGGTTGTGGTCTGCT‑CCACAAGTACTGCAAAGTCCTTGAAACCTGCg < 1:301102/150‑1 (MQ=255) aTCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCaaa < 2:902098/128‑1 (MQ=255) aTCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCaaa > 1:902098/1‑128 (MQ=255) aTCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATAc > 2:547984/1‑150 (MQ=255) ggTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgt > 1:633759‑M2/1‑147 (MQ=255) cacaTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagc < 1:59363‑M1/150‑44 (MQ=255) cacaTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATAc < 1:556584/140‑1 (MQ=255) cacaTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATAc > 2:556584/1‑140 (MQ=255) cacaTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagc > 2:850088‑M2/1‑141 (MQ=255) caTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgg > 1:547984‑M2/1‑139 (MQ=255) aGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGAATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaa > 2:837759‑M2/1‑135 (MQ=255) ggCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggcgcgggcaagc > 1:427648‑M2/1‑133 (MQ=255) ggCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagc > 2:1014667‑M2/1‑133 (MQ=255) gtgtggGGGGTCTGTGCACGGCTTAGATAACCGCTTGTCGAGGCCGCGTCCAGCGGCGCATGTGTGGGCCTCTTCGCGG‑GCTCGCCCCCTCCCACAAGTACGGCAAAGGCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccg > 2:64136‑M2/2‑130 (MQ=255) ttAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcg > 1:97567‑M1/1‑74 (MQ=255) ttAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcg < 2:97567‑M1/118‑45 (MQ=255) gATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaa > 2:385137‑M2/1‑105 (MQ=255) gATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaa < 1:385137‑M2/120‑16 (MQ=255) aaGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCCAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAaca > 2:220109/1‑150 (MQ=255) tCCAGCGGCGCCTGTACCGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtactt < 1:745628‑M1/83‑36 (MQ=255) tCCAGCGGCGCCTGTACCGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtactt > 2:745628‑M1/1‑48 (MQ=255) ttCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATGACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTg > 1:345465/1‑150 (MQ=255) cgG‑GCTTGCCCGCTCCCACAggtattacgcaggtttcaaggcctttgccgtacttgtgggagggggcgagcccgcgaagaggcccacacatgcgccgctggacgcggcctcgacaagcggttatctaagccgtgcacagaccccccacac > 2:64136‑M1/1‑20 (MQ=255) gCTTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggcc > 2:1014667‑M1/1‑17 (MQ=255) gCTTGCCCGCGCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggcc > 1:427648‑M1/1‑17 (MQ=255) ttGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccattcaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccct > 2:837759‑M1/1‑15 (MQ=255) ttGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatc > 2:385137‑M1/1‑15 (MQ=255) ttGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatc < 1:385137‑M1/120‑106 (MQ=255) ttGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAcgccg > 2:292317/1‑150 (MQ=255) ttGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAcgccg > 1:354649/1‑150 (MQ=255) ccGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatg > 1:547984‑M1/1‑11 (MQ=255) ccGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCgg > 1:671412/1‑150 (MQ=255) cGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaa < 2:97567‑M2/118‑75 (MQ=255) cGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaa > 1:97567‑M2/1‑44 (MQ=255) gCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtg > 2:850088‑M1/1‑9 (MQ=255) gCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtg < 1:59363‑M2/150‑108 (MQ=255) cacaAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGCTGGGCCTCATAAGCTGGCAACGCCGCCGGCCCATcc > 1:274833/1‑150 (MQ=255) acaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtgaaaacc > 1:633759‑M1/1‑3 (MQ=255) acaAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATCGTTTTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCTGCCGGCACATCCg > 1:346942/1‑150 (MQ=39) aaGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggccggtacaggcgccgctgga > 2:745628‑M2/1‑35 (MQ=255) aaGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggccggtacaggcgccgctgga < 1:745628‑M2/83‑49 (MQ=255) | GATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG‑GCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCG > NC_002947/5288323‑5288618 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |