New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5634754	45 (1.040)	4 (0.100)	4/242	NT	8.5%	intergenic (+279/+104)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
	?	NC_002947	= 5634797	43 (1.040)					intergenic (+322/+61)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein

TACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCT  >  NC_002947/5634613‑5634900                                                                                                                                              |                                                                                                                                                   tACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCCCAGGTCGTCGTGTAGGAGGAAATTCACTTGCAAATGTGGCGTACCTGCTGGCCAATTTCTACCCGCCGTTCACt                                                                                                                                            <  1:21731/150‑1 (MQ=255)    cGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGtt                                                                                                                                                >  2:890363/1‑143 (MQ=255)    cGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGtt                                                                                                                                                <  1:890363/143‑1 (MQ=255)    cGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGtt                                                                                                                                         <  2:1040120/150‑1 (MQ=255)     gTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTg                                                                                                                                        >  1:644654/1‑150 (MQ=255)         aTCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAGCCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTgccgc                                                                                                                                    <  1:613569/150‑1 (MQ=255)            cccTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGccac                                                                                                                                 >  2:266102/1‑150 (MQ=255)             ccTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGCGAAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGccacc                                                                                                                                >  2:878772/1‑150 (MQ=255)                 gAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCg                                                                                                                            <  2:385039/150‑1 (MQ=255)                   aaTTATCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAACCCCGCCCATATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAACACGCCGCTCATGCTGTCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTa                                                                                                                          <  2:431769/150‑1 (MQ=25)                       ctcGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTaa                                                                                                                      <  2:867/150‑1 (MQ=255)                       ctcGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTaa                                                                                                                      <  2:834/150‑1 (MQ=255)                           gccgCCTGAACCGGACCTTTCGCGGGTAAACCCGCCCCTATAAACAGGCACAGGCCGTCGTGGAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCa                                                                                                                  >  2:882942/4‑150 (MQ=25)                            cTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCaa                                                                                                                 <  2:106276/150‑1 (MQ=255)                             tGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAg                                                                                                                <  2:644654/150‑1 (MQ=255)                                   ggCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAg                                                                                                          <  2:977104/150‑1 (MQ=255)                                    gCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAgc                                                                                                         >  1:75898/1‑150 (MQ=255)                                          ccTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggt                                                                                                   >  1:266102‑M2/1‑144 (MQ=255)                                            tttCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTg                                                                                                 >  1:755203/1‑150 (MQ=255)                                                  gggTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCgg                                                                                           <  2:828184/150‑1 (MQ=255)                                                   ggTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCggg                                                                                          <  1:540960/150‑1 (MQ=255)                                                   ggTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCACGGGTTGGATCggg                                                                                          <  1:1068523/150‑1 (MQ=255)                                                     tAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTAACAGACGTTCACTGTTTGCGCCACCACCGGATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGa                                                                                        >  2:799830/1‑150 (MQ=37)                                                          ccGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATc                                                                                   >  2:604169/1‑150 (MQ=255)                                                               ccTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAg                                                                              <  2:691316/150‑1 (MQ=255)                                                                  ataCACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACAGTATTAAGCCAAGTAGAAGCTCGTTTTTCATCTTGTACTATCCGGAGCTc                                                                           >  2:850425/1‑150 (MQ=21)                                                                      acaTGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgg                                                                                                     <  1:142344‑M1/120‑48 (MQ=255)                                                                      acaTGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgg                                                                                                     >  2:142344‑M1/1‑73 (MQ=255)                                                                       caTGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTaa                                                                                                                      >  1:399892/1‑102 (MQ=255)                                                                       caTGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTaa                                                                                                                      <  2:399892/102‑1 (MQ=255)                                                                          gCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaa                                                                                              <  1:672940‑M1/123‑55 (MQ=255)                                                                          gCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaa                                                                                              >  2:672940‑M1/1‑69 (MQ=255)                                                                                gCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGc                                                             >  2:502554/1‑150 (MQ=255)                                                                                              gCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGCGCTCCCCTCAGACAGAGCTCCGGCCAAAAGtt                                               <  2:625285/150‑1 (MQ=255)                                                                                              gCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGtt                                               >  1:642177/1‑150 (MQ=255)                                                                                                 ggTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCt                                            >  2:631402/1‑150 (MQ=255)                                                                                                        ccGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCa                                     >  1:891749/1‑150 (MQ=255)                                                                                                          gcgAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCAtt                                   <  1:920497/150‑1 (MQ=255)                                                                                                           cgAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTg                                  <  2:891749/150‑1 (MQ=255)                                                                                                            gAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTgg                                 <  1:799830/150‑1 (MQ=255)                                                                                                            gAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCATATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGAGAGAGCTCCGGCCAAAAGTTGCTCAAACTATTgg                                 >  2:574918/1‑150 (MQ=255)                                                                                                             aaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGt                                <  1:882942/150‑1 (MQ=255)                                                                                                             aaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGt                                <  1:1100693/150‑1 (MQ=255)                                                                                                                        ccTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAAt                     <  1:878772/150‑1 (MQ=255)                                                                                                                            ctgGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCaaa                 <  1:1068931/150‑1 (MQ=255)                                                                                                                            ctgGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCaaa                 <  1:717459/150‑1 (MQ=255)                                                                                                                            ctgGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGAGCGGGGACTATCCGGAGCGCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACATTAGGTGAAAGCGCAATCaaa                 >  1:899532/1‑150 (MQ=255)                                                                                                                             tgGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAg                <  1:631402/150‑1 (MQ=255)                                                                                                                               gCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCa              >  2:488049/1‑150 (MQ=255)                                                                                                                                 cAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGTGGGTTGGATCGGGGACTATCCGGAGCTCCCCACAGCGGAAGAGCCTGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGa            >  2:578941/1‑150 (MQ=255)                                                                                                                                 cAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCTGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGa            >  1:675370/1‑150 (MQ=255)                                                                                                                                 cAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGa            >  2:501236/1‑150 (MQ=255)                                                                                                                                    tttCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgc                                    >  2:672940‑M2/1‑54 (MQ=255)                                                                                                                                    tttCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgc                                    <  1:672940‑M2/123‑70 (MQ=255)                                                                                                                                         aCCCGCgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgcatgtgtataggggcgggtttacccgcgaaagg    >  1:266102‑M1/1‑6 (MQ=255)                                                                                                                                           ccgccgTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgcatgt                                <  1:142344‑M2/120‑74 (MQ=255)                                                                                                                                           ccgccgTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCgcgggtagaaattggccagcaggtccggcctcttcgcgggtgaacccgctcctacacgacggcctgtgcatgt                                >  2:142344‑M2/1‑47 (MQ=255)                                                                                                                                           ccgccgTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGtgct  <  1:920524/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                   TACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGTGAAAGCGCAATCAAAGCAGACAGCTGTGCT  >  NC_002947/5634613‑5634900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.