| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 401316 | NA (NA) | 3 (0.080) | 3/228 | NT | 8.7% | coding (899/1059 nt) | PP_0334 | transposase |
| ? | NC_002947 | = 401372 | 35 (0.810) | coding (955/1059 nt) | PP_0334 | transposase | |||||
CATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCT > NC_002947/401245‑401519 | ttcggtttgcgttggtaaacctgatcgctctgtaacagggcccagataatccgcaGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCg > 1:87042‑M1/56‑150 (MQ=255) cggatgatCCAGGGCTCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTgg < 2:252242/148‑1 (MQ=17) gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGc > 1:188262/1‑150 (MQ=32) gatgatACAGGGCGCGCCTTCCATCTGGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGATGTTGCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGc < 1:1093304/150‑1 (MQ=11) tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTggg > 1:69955/1‑144 (MQ=32) tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTggg < 2:69955/144‑1 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑c > 1:1002750/1‑150 (MQ=32) gcgcgcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑Caga < 2:1074912/150‑1 (MQ=32) gcgcgcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑Caga < 1:597098/150‑1 (MQ=32) aTTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGGGCGagc < 2:275327/150‑3 (MQ=17) ttCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCa < 1:792278/150‑1 (MQ=32) tCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAg < 1:339565/150‑1 (MQ=32) ccGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAgg < 2:113990/150‑1 (MQ=32) ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTAc < 2:473643/150‑1 (MQ=32) ggCCAGCTAAGGCCTGATTCCGTTCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCaa < 2:279788/149‑1 (MQ=17) ccAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACg < 2:361288/150‑1 (MQ=32) tAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAAc < 1:155931/150‑1 (MQ=32) gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACcgaa < 1:316108/150‑1 (MQ=32) ATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaa < 1:907297‑M1/150‑1 (MQ=255) ccGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAtctggctgatcggtatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtca < 2:607527‑M2/150‑82 (MQ=255) gATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCg > 2:945439/1‑150 (MQ=32) aTCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCgg > 1:481172/1‑150 (MQ=32) gCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccct > 1:732318‑M2/1‑62 (MQ=255) gCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccct < 2:732318‑M2/114‑53 (MQ=255) gatgatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATc > 1:121011/1‑109 (MQ=33) gatgatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATc < 2:121011/109‑1 (MQ=33) atgatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTa < 2:907297/150‑1 (MQ=32) gatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAg > 1:1083561/1‑108 (MQ=33) gatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAg < 2:1083561/108‑1 (MQ=33) gatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATg > 2:239953/1‑150 (MQ=32) atCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGa < 2:1054503/150‑1 (MQ=32) atCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGa < 2:1054387/150‑1 (MQ=32) cgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATTAGTCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctc > 2:1002023/1‑150 (MQ=17) ctctTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa < 2:513081/150‑1 (MQ=32) gcTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCg > 2:488318/1‑150 (MQ=32) cTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg < 1:71034/150‑1 (MQ=32) tATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt > 2:920289/1‑150 (MQ=32) ccGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt > 2:569171/1‑146 (MQ=32) ccGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt < 1:569171/146‑1 (MQ=32) cgcAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCt < 2:386601/150‑1 (MQ=32) gaggCGGCGATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatatgattttgtttccgctgctgtgctgatcggg < 2:528674‑M2/150‑138 (MQ=255) aggCGGCGATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatctgattttgtttccgctgctgtgctgatcgggc > 2:1093304‑M2/1‑12 (MQ=255) aggCGGCGATCAtctggctgagcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatctgattttgtttccgctgctgtgctgatcgggc > 1:158594‑M2/1‑12 (MQ=255) ggcggcGATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatctgattttgtttccgctgctgtgctgatcgggca > 1:607527‑M2/1‑11 (MQ=255) gcggcgATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatctgattttgtttccgctgctgtgctgatcgggcac < 1:387532‑M2/150‑141 (MQ=255) ggcgATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatctgattttgtttccgctgctgtgctgatcgggcacga > 2:227418‑M2/1‑8 (MQ=255) ggcgATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatctgattttgtttccgctgctgtgctgatcgggcacga > 1:513081‑M2/1‑8 (MQ=255) ggcgATCAtctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatctgattttgtttccgctgctgtgctgatcgggcacga < 1:117854‑M2/150‑143 (MQ=255) gATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAccc < 1:945439/150‑1 (MQ=32) atcatctggctgatcggaatcaggccttagctggctcaagacggaatgcgcgccctggatcatcaggctgcgtatgtagccgtcaccgcgcttgctcatcttgcccaatctgattttgtttccgctgctgtgctgatcgggcacgatacc < 2:18476‑M2/150‑147 (MQ=255) tCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGACTTGTTAGTAAATAGCTTTGG‑GTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCt < 1:1098006/150‑1 (MQ=11) | CATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTA‑CAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCT > NC_002947/401245‑401519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |