New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 64040541 (0.950)4 (0.100) 4/234 NT 9.1% coding (343/1929 nt) PP_0551 MORN domain‑containing protein
?NC_002947 = 640429 42 (1.050)coding (319/1929 nt) PP_0551 MORN domain‑containing protein

CTGAAACAGCCCCTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATGGCGAGGACCGGGCAATAGGTCTGC  >  NC_002947/640280‑640577
                                                                                                                                                     |                                                                                                                                                    
cTGAAACAGCCCCTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGcc                                                                                                                                                      >  2:328569/1‑150 (MQ=255)
  gAAACAGCCCCTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCat                                                                                                                                                    >  1:8971‑M2/1‑148 (MQ=255)
        gCCCCTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCatcgacta                                                                                                                                              >  1:656575‑M2/1‑142 (MQ=255)
            cTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCatcgactac                                                                                                                                             >  2:673643‑M2/1‑138 (MQ=255)
            cTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCt                                                                                                                                           >  2:54974/1‑149 (MQ=255)
            cTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCt                                                                                                                                           <  1:54974/149‑1 (MQ=255)
            cTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCAGGCCCTCACCCTGCAGCAGGCCatcgactac                                                                                                                                             <  1:673643‑M2/147‑10 (MQ=255)
                          cgcgGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACggc                                                                                                                            >  2:508363/1‑148 (MQ=255)
                                   ccTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAg                                                                                                                   <  1:254530/150‑1 (MQ=255)
                                    cTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAgg                                                                                                                  >  1:681554/1‑150 (MQ=255)
                                         cGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGcc                                                                                                             <  1:328569/150‑1 (MQ=255)
                                           ttCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGt                                                                                                           <  2:409309/150‑1 (MQ=255)
                                                    tgccatTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTcgggc                                                                                                  >  1:723361/1‑150 (MQ=255)
                                                      ccatTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTcgggcgg                                                                                                >  2:59811/1‑150 (MQ=255)
                                                         ttCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCTTGCGGCGGGCGGGag                                                                                             <  2:46097/150‑1 (MQ=255)
                                                             cccTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGagcagc                                                                                         >  1:386564/1‑150 (MQ=255)
                                                             cccTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGagcagc                                                                                         >  2:817704/1‑150 (MQ=255)
                                                                  gCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATtc                                                                                    <  1:817704/150‑1 (MQ=255)
                                                                          aCTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATtcgccatcgc                                                                            >  1:1015691/1‑150 (MQ=255)
                                                                            tGGTCGTCATGGAGGCGGCGGGCGTACCAGTGGCCGTTGGGGTAGTCGATCGGGCCCTCACCCTGCGGCAGGCCATCGACTACCGGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATtcgccatcgcca                                                                          <  2:549531/150‑1 (MQ=255)
                                                                              gCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCcaca                                                                        >  1:792694/1‑150 (MQ=255)
                                                                                cGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAgg                                                                      >  1:302818/1‑150 (MQ=255)
                                                                                 gTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAg                                                                                                               <  1:338914/108‑1 (MQ=255)
                                                                                 gTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAg                                                                                                               >  2:338914/1‑108 (MQ=255)
                                                                                  gccTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCAACGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAggcg                                                                    <  1:79812/149‑1 (MQ=255)
                                                                                    cTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAggcggc                                                                  >  2:556780/1‑150 (MQ=255)
                                                                                     ttGAAGCTGCCGGCGTACCAGCTTCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGggggcg                                                                 >  2:550092/1‑150 (MQ=255)
                                                                                      tGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGa                                                                <  2:734798/150‑1 (MQ=255)
                                                                                        aaGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGagc                                                              >  2:353697/1‑150 (MQ=255)
                                                                                            tGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGTGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAgcagca                                                          <  2:739221/150‑1 (MQ=255)
                                                                                            tGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAgcagca                                                          <  1:59811/150‑1 (MQ=255)
                                                                                                  cGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCACTGCCACAGGCGGCGAGCAGCAGGACCa                                                    <  1:996005/150‑1 (MQ=255)
                                                                                                      ccAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGt                                                >  2:23721/1‑150 (MQ=255)
                                                                                                           tGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATgg                                           >  1:370812/1‑150 (MQ=255)
                                                                                                           tGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATgg                                           >  1:125885/1‑150 (MQ=255)
                                                                                                            gacGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATggg                                          >  2:1067850/3‑150 (MQ=255)
                                                                                                                ttGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAggc                                                                     <  1:444470/119‑1 (MQ=255)
                                                                                                                ttGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAggc                                                                     >  2:444470/1‑119 (MQ=255)
                                                                                                                 tGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCa                                     <  2:125885/150‑1 (MQ=255)
                                                                                                                 tGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCa                                     <  2:1015691/150‑1 (MQ=255)
                                                                                                                     gTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCatcgactaccccaacggcagctggtacgccggcagcttcaaggacggccagtggcacggccagggcgaatggcatggccagaac                                                                  >  1:795550‑M2/1‑33 (MQ=255)
                                                                                                                     gTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCatcgactaccccaacggcagctggtacgccggcagcttcaaggacggccagtggcacggccagggcgaatggcatggccagaac                                                                  <  2:795550‑M2/117‑85 (MQ=255)
                                                                                                                         tCGATCCGGCCCTCACCCTGCAGCAGGCCatcgactaccccaacggcagctggtacgccggcagcttcaaggacggccagtggcacggccagggcgaatggcatggccagaacg                                                                 <  2:168428‑M2/114‑86 (MQ=255)
                                                                                                                         tCGATCCGGCCCTCACCCTGCAGCAGGCCatcgactaccccaacggcagctggtacgccggcagcttcaaggacggccagtggcacggccagggcgaatggcatggccagaacg                                                                 >  1:168428‑M2/1‑29 (MQ=255)
                                                                                                                           gATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCAt                           <  2:370812/150‑1 (MQ=255)
                                                                                                                            aTCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATGTCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATg                          <  1:79227/150‑1 (MQ=255)
                                                                                                                             tCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATgg                         >  2:277307/1‑150 (MQ=255)
                                                                                                                               cGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTcgggcgg                                                                                                >  2:937514/1‑77 (MQ=255)
                                                                                                                               cGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTcgggcgg                                                                                                <  1:937514/77‑1 (MQ=255)
                                                                                                                                 gCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATGGCGAg                     >  1:1003352/1‑150 (MQ=255)
                                                                                                                                     tCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATGGCGAGGAcc                 >  2:519623/1‑150 (MQ=255)
                                                                                                                                      cACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATGGCGAGGACCg                <  2:681554/150‑1 (MQ=255)
                                                                                                                                             aagcagGCCATCTACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATGGCGAGGACCGGGCAATa         <  1:462074/149‑1 (MQ=255)
                                                                                                                                                 agGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTgg                                 <  2:681551/122‑1 (MQ=255)
                                                                                                                                                 agGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTgg                                 >  1:681551/1‑122 (MQ=255)
                                                                                                                                                   gCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATGGCGAGGACCGGGCAATAg        >  2:1011208/1‑145 (MQ=255)
                                                                                                                                                   gCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATGGCGAGGACCGGGCAATAg        <  1:1011208/145‑1 (MQ=255)
                                                                                                                                                    ccATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGAGGACGCATGGCGAGGACCGGGCAATAGGTCTGc  <  2:386564/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CTGAAACAGCCCCTCGGCGAACTGGCCGCGGTAGACCTCGCCGTTCTGGCCATGCCATTCGCCCTGGCCGTGCCACTGGCCGTCCTTGAAGCTGCCGGCGTACCAGCTGCCGTTGGGGTAGTCGATCCGGCCCTCACCCTGCAGCAGGCCATCGACTACCTGCCCCCGGTAACGCCCACCGTCAGGCAGCCGTGCGTCGGGCGGGAGCAGCGATTCGCCATCGCCACAGGCGGCGAGCAGCAGGACCAGGGTAATGGGGAGCAGTGGACGCATGGCGAGGACCGGGCAATAGGTCTGC  >  NC_002947/640280‑640577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.