New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1273319 =	31 (0.720)	3 (0.080) +GCAGGCGACGCGGT	3/226	NT	8.7%	intergenic (+104/+64)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	3028171 =	40 (0.920)					intergenic (+2/‑220)	PP_2642/pcaY	GntR family transcriptional regulator/aromatic acid chemoreceptor

GGTGCGCAGTGGGCGACAGTTTTCACCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCGGTTAC  >  NC_002947/3028025‑3028307                                                                                                                                                   |                                                                                                                                         ggtgCGCAGTGGGCGACAGTTTTCACCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCACTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGAt                                                                                                                                       <  2:1105005/150‑1 (MQ=255)                         aCCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTcgc                                                                                                               >  2:994736/1‑150 (MQ=255)                           cGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGGTGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                                             <  2:572232/150‑1 (MQ=255)                                 gCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGc                                                                                                       >  1:534049/1‑150 (MQ=255)                                   cATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGccc                                                                                                     >  2:292280/1‑150 (MQ=255)                                     tGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCTCGGGCAAGCCCGc                                                                                                   >  2:385697/1‑150 (MQ=255)                                       ccGAGACCGCATTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTc                                                                                                 >  2:515363/1‑150 (MQ=255)                                       ccGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTc                                                                                                 >  1:97831/1‑150 (MQ=255)                                        cGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTcc                                                                                                >  1:555264/1‑150 (MQ=255)                                            gtanaagaagtgccacggcgcctgatcgactgacgcgataaaaatctgagagatggcacggaaactgtgggagcgggcaagcccgcgaagcaggcgacgcggtGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCcaca                                                                                            >  2:697131‑M2/104‑150 (MQ=255)                                                                tGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAgg                                                                        <  2:385640/150‑1 (MQ=255)                                                                 gCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCCACGCCTGTCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGa                                                                       <  1:624502/150‑1 (MQ=255)                                                                  cTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCggg                                                                                                            <  1:285223/112‑1 (MQ=255)                                                                  cTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCggg                                                                                                            >  2:285223/1‑112 (MQ=255)                                                                   ttCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTc                                                                                                 >  1:954141/1‑122 (MQ=255)                                                                   ttCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTc                                                                                                 <  2:954141/122‑1 (MQ=255)                                                                   ttCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCATAAGGAtt                                                                     >  1:601158/1‑150 (MQ=255)                                                                      gCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTCATCGCGCTGGCCTCAGGATTTAt                                                                  <  2:555264/150‑1 (MQ=255)                                                                       cTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTATCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATg                                                                 <  2:534049/150‑1 (MQ=255)                                                                       cTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCTCGCTGGCCTCAGGATTTATg                                                                 <  1:562994/150‑1 (MQ=255)                                                                                        ccGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCt                                                >  1:379288/1‑150 (MQ=255)                                                                                            cAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAg                                            <  1:292280/150‑1 (MQ=255)                                                                                            agagatggctcgaacactgtgggagcgggcaagcccgcgaagcaggcgacgcggtGGATGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                                             <  2:715205‑M2/30‑1 (MQ=255)                                                                                            agagatggctcgaacactgtgggagcgggcaagcccgcgaagcaggcgacgcggtGGATGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                                             >  1:715205‑M2/56‑85 (MQ=255)                                                                                              ggCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGccc                                                 <  1:521835/143‑1 (MQ=255)                                                                                              ggCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGccc                                                 >  2:521835/1‑143 (MQ=255)                                                                                               gCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGAttt                                                                    >  1:295576/1‑123 (MQ=255)                                                                                               gCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGAttt                                                                    <  2:295576/123‑1 (MQ=255)                                                                                                    ccAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAg                                                                         >  2:705614/1‑113 (MQ=255)                                                                                                    ccAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAg                                                                         <  1:705614/113‑1 (MQ=255)                                                                                                    ccAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGa                                    <  2:97831/150‑1 (MQ=255)                                                                                                     cAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAg                                   <  1:994736/150‑1 (MQ=255)                                                                                                      aaCGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAg                                                                         <  2:351005/111‑1 (MQ=255)                                                                                                      aaCGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAg                                                                         >  1:351005/1‑111 (MQ=255)                                                                                                           cTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCgtg                                                                                                                    >  1:753483/1‑63 (MQ=255)                                                                                                           cTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCgtg                                                                                                                    <  2:753483/63‑1 (MQ=255)                                                                                                             ggCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGGAAGCCCGCTCCCACCGTGATCGCGCTGGCCTCAGGATTTATGCACAAGGGTTATGCCCTAAAAGATGTCGACTCctcttt                           >  2:28995/1‑148 (MQ=37)                                                                                                             ggCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTgg                           <  1:553972/150‑1 (MQ=255)                                                                                                                aGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGtc                        >  1:149890/1‑150 (MQ=255)                                                                                                                           aaGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTc             >  2:1078850/1‑150 (MQ=255)                                                                                                                               gATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGtt         >  2:994639/1‑150 (MQ=255)                                                                                                                                      aaGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCGGTTAc  <  1:1078850/150‑1 (MQ=255)                                                                                                                                         gcgcGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCAGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGc                                 >  2:572300/1‑116 (MQ=255)                                                                                                                                         gcgcGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCAGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGc                                 <  1:572300/116‑1 (MQ=255)                                                                                                                                                   ggATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAg                                            <  1:975021/95‑1 (MQ=255)                                                                                                                                                   ggATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAg                                            >  2:975021/1‑95 (MQ=255)                                                                                                                                                   |                                                                                                                                         GGTGCGCAGTGGGCGACAGTTTTCACCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCGGTTAC  >  NC_002947/3028025‑3028307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.