New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1506420	49 (1.130)	3 (0.070)	3/244	NT	5.7%	coding (312/780 nt)	petC	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit
	?	NC_002947	= 1506462	52 (1.250)					coding (354/780 nt)	petC	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit

TATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGTCTGCAAGGTAACCAGGTGGTGGGTTGC  >  NC_002947/1506315‑1506600                                                                                                                                                    |                                                                                                                                           tATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTTACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTac                                                                                                                                          >  1:74870‑M2/1‑148 (MQ=255)     ccGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGAt                                                                                                                                      >  1:471075/1‑150 (MQ=255)      cGCATGAACGGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGAtt                                                                                                                                     >  2:924639/1‑150 (MQ=255)          tGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTAGGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCAATTGGCt                                                                                                                                 >  2:323536/1‑150 (MQ=255)                gATGCTCGAGAAGCTGGTGTTCACAGGTGCAAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTacac                                                                                                                           <  2:141323/150‑1 (MQ=255)                       gagaAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCCGATTCATAGCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTg                                                                                                                    >  1:693948/1‑150 (MQ=255)                       gagaAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTa                                                                                                                              >  1:752044/1‑140 (MQ=255)                       gagaAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTa                                                                                                                              <  2:752044/140‑1 (MQ=255)                           aGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCa                                                                                                                <  1:45413/150‑1 (MQ=255)                              tGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGtt                                                                                                             >  1:763775/1‑150 (MQ=255)                                gtgtTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTc                                                                                                           <  1:1067181/150‑1 (MQ=255)                                  gtTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTa                                                                                                         <  2:471075/150‑1 (MQ=255)                                     cacaGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGa                                                                                                      <  1:756163/150‑1 (MQ=255)                                       caGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAgg                                                                                                    <  2:212871/150‑1 (MQ=255)                                        aGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGa                                                                                                   <  2:746199/150‑1 (MQ=255)                                         ggTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGAc                                                                                                  <  1:376359/150‑1 (MQ=255)                                             ccAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCAt                                                                                              <  1:275576/150‑1 (MQ=255)                                                      gTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCtt                                                                                     >  2:107626/1‑150 (MQ=255)                                                         acaccaTGCAGAAAGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATg                                                                                  >  2:739349/5‑150 (MQ=255)                                                           cacaTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTa                                                                                                                                           >  1:487915‑M2/1‑90 (MQ=255)                                                           cacaTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTa                                                                                                                                           <  2:487915‑M2/91‑2 (MQ=255)                                                            acaTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATgggg                                                                               >  1:486903/1‑150 (MQ=255)                                                              aTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACacctacct                                                                                                                     <  2:505323/110‑1 (MQ=255)                                                              aTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACacctacct                                                                                                                     >  1:505323/1‑110 (MQ=255)                                                               tGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTaca                                                                                                                            <  1:858515/102‑1 (MQ=255)                                                               tGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTaca                                                                                                                            >  2:858515/1‑102 (MQ=255)                                                                    aTCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTac                                                                                                                             >  2:325333/1‑96 (MQ=255)                                                                    aTCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTac                                                                                                                             <  1:325333/96‑1 (MQ=255)                                                                     tCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAacaaca                                                                      >  2:838203/1‑150 (MQ=255)                                                                      cGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAAcaacaa                                                                     <  1:107626/150‑1 (MQ=255)                                                                       ggTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAg                                                                    <  1:924639/150‑1 (MQ=255)                                                                        gTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAgg                                                                   >  2:617718/1‑150 (MQ=255)                                                                        gTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAgg                                                                   >  2:847520/1‑150 (MQ=255)                                                                         tATGAAGCCCAGCGACGCCAAGACCTGGTGCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGAGTGGCTTTACACCTACCCGCGCAGTTTCTATGAGGACCCATCCCGCCCGTATGGGTTGCAcaacaaacg                                                                  >  2:516052/1‑147 (MQ=255)                                                                               gCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACAACTACCTGCGCAGATTCTATAAGGACCCAACCCTCGCTTATAGGGTGAACAACAAGGTATTcac                                                            >  2:456570/1‑148 (MQ=255)                                                                                       aCGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTg                                                    <  1:91291/150‑1 (MQ=255)                                                                                          ccAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCa                                                 >  1:124940/1‑150 (MQ=255)                                                                                          ccAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCa                                                 >  1:1015861/1‑150 (MQ=255)                                                                                           cAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCAt                                                >  1:592686/1‑150 (MQ=255)                                                                                           cAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCAt                                                >  1:506979/1‑150 (MQ=255)                                                                                                 cTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtggtcaccgatcttggcacctgtgaacaccagcttctcgagcatcagttcat                                          <  2:1139‑M2/150‑99 (MQ=255)                                                                                                 cTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAg                                                                    <  2:767320/124‑1 (MQ=255)                                                                                                 cTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAg                                                                    >  1:767320/1‑124 (MQ=255)                                                                                                  tGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtg                                                                                            >  1:686134‑M2/1‑51 (MQ=255)                                                                                                  tGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtg                                                                                            <  2:686134‑M2/99‑49 (MQ=255)                                                                                                    gTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCACTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGt                                       <  2:486903/150‑1 (MQ=255)                                                                                                         gTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATggg                                                                                <  2:1011656/104‑1 (MQ=255)                                                                                                         gTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATggg                                                                                >  1:1011656/1‑104 (MQ=255)                                                                                                              gcgcCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGt                             >  2:449186/1‑150 (MQ=255)                                                                                                                    cccGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGTCTGCaa                       <  1:739349/150‑1 (MQ=255)                                                                                                                          cTGACACGGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTGCACCACTCGGCGCAGTTTCGATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGTCTGCAAGGTAAc                 <  2:738255/150‑1 (MQ=255)                                                                                                                           tGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACAGCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGTCTGCAAGGTAAcc                >  2:159792/1‑150 (MQ=255)                                                                                                                           tGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGc                                              <  2:1126107/120‑1 (MQ=255)                                                                                                                           tGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGc                                              >  1:1126107/1‑120 (MQ=255)                                                                                                                               acTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGcc                                             <  1:981480/117‑1 (MQ=255)                                                                                                                               acTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGcc                                             >  2:981480/1‑117 (MQ=255)                                                                                                                                   gTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGTCTGCAAGGTAACCAGgtggtg        <  2:40933/150‑1 (MQ=255)                                                                                                                                   gTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTACCGAACTTTGGCATGCCTAACGTGCTGGTGGGTCTGCAAGGTAACCAGgtggtg        <  1:577183/150‑1 (MQ=255)                                                                                                                                       cccGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGTCTGCAAGGTAACCAGGTGCTGGGtt    <  2:592686/150‑1 (MQ=255)                                                                                                                                         cgcgTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGTCTGCAAGGTAACCAGGTGGTGGGTTGc  <  1:449186/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                           TATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGGTGGGTCTGCAAGGTAACCAGGTGGTGGGTTGC  >  NC_002947/1506315‑1506600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.