New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 248909547 (1.080)6 (0.140) 6/246 NT 11.8% coding (49/1578 nt) PP_2184 formate dehydrogenase subunit beta
?NC_002947 = 2489113 44 (1.050)coding (67/1578 nt) PP_2184 formate dehydrogenase subunit beta

TGTGCCTGCTCGCCAGCGCTGGAGCTGGACGGCCAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCAAGGGCGCCTGGGTTTCGGCCCGATT  >  NC_002947/2488964‑2489262
                                                                                                                                                       |                                                                                                                                                     
tgtgCCTGCTCGCCAGCGCTGGAGCTGGACGGCCAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTg                                                                                                                                                       >  2:1051705/1‑150 (MQ=255)
        cgcccaaGCCCTAGAGCTGGAAGGCAAGGTGCACCCTCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAg                                                                                                                                               <  2:10316/144‑1 (MQ=255)
           gCCAGCGCTGGAGCTGGACGGCCAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGGCGACCAGGtt                                                                                                                                            >  2:797036/1‑150 (MQ=255)
           gCCAGCGCTGGAGCTGGACGGCCAGGTGCACGCGCGCCTCACACCTGAGCGCCTGCGGGACTTGGGCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGtt                                                                                                                                            >  1:22357/1‑150 (MQ=255)
              aGCGCTGGAGCTGGACGGCCAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGcc                                                                                                                                         >  2:894852/1‑150 (MQ=255)
                cgcTGGAGCTGGACGGCCAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGa                                                                                                                                       <  2:489463/150‑1 (MQ=255)
                             cGGCCAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTgcgc                                                                                                                          <  2:941191/150‑1 (MQ=255)
                                ccAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAg                                                                                                                       <  1:461368/150‑1 (MQ=255)
                                ccAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAg                                                                                                                       <  1:576227/150‑1 (MQ=255)
                                   ggTGCACGTGCGCCTCACCCCTGAGCGCGCGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGcc                                                                                                                    <  2:608589/150‑1 (MQ=255)
                                    gTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGCACCCACGGCACGGGCTAccgaatcacagggaatatacagcttcag                                                                                                                           <  2:862651‑M2/142‑29 (MQ=255)
                                    gTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGCACCCACGGCACGGGCTAccgaatcacagggaatatacagcttcag                                                                                                                           >  1:862651‑M2/1‑114 (MQ=255)
                                     tGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGa                                                                                                                  <  1:666629/150‑1 (MQ=255)
                                                 tCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGtt                                                                                                      >  1:692657/1‑150 (MQ=255)
                                                 tCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGtt                                                                                                      <  1:894852/150‑1 (MQ=255)
                                                   aCCCCGGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGc                                                                                                    <  2:285466/150‑1 (MQ=255)
                                                     cccTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGa                                                                                                                  >  2:741637/1‑134 (MQ=255)
                                                     cccTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGa                                                                                                                  <  1:741637/134‑1 (MQ=255)
                                                      ccTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGc                                                                                                 <  1:342441/150‑1 (MQ=255)
                                                        tgcgcgcCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTg                                                                                               <  2:323019/147‑1 (MQ=255)
                                                        tGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTg                                                                                               <  2:741948/150‑1 (MQ=255)
                                                                  cGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGCGCGCCGCCAGTTGCCGCTGGACATCCAgc                                                                                     <  1:1051705/150‑1 (MQ=255)
                                                                   gggACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAgcg                                                                                    >  1:594005/1‑150 (MQ=255)
                                                                       cTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCt                                                                                                >  1:831969/1‑134 (MQ=255)
                                                                       cTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCt                                                                                                <  2:831969/134‑1 (MQ=255)
                                                                        ttGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCa                                                                               >  1:926322/1‑150 (MQ=255)
                                                                         tGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAg                                                                              <  2:722671/150‑1 (MQ=255)
                                                                              aaCGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGGCCATGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTcgc                                                                         >  2:1061439/1‑150 (MQ=255)
                                                                              aaCGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTcgc                                                                         >  2:1061358/1‑150 (MQ=255)
                                                                                             gaCTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCCCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTActggc                                                          >  2:875233/1‑150 (MQ=255)
                                                                                                tCAGCATGCTGAAGCTGTCTATGCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCCCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTActggctgg                                                       <  1:335280/150‑1 (MQ=255)
                                                                                                        cTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTg                                               >  1:144838/1‑150 (MQ=255)
                                                                                                              cTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAg                                         >  1:830280/1‑150 (MQ=255)
                                                                                                                 tataTTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGc                                      >  1:1030481/1‑150 (MQ=255)
                                                                                                                 tataTTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGc                                      >  2:307149/1‑150 (MQ=255)
                                                                                                                  atatTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCg                                     >  1:386443/1‑150 (MQ=255)
                                                                                                                   tatTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGa                                    <  2:692657/150‑1 (MQ=255)
                                                                                                                    atTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGGGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGAc                                   >  2:418787/1‑150 (MQ=255)
                                                                                                                          tgtgATTCGGTAGCCCGTGCCGTGGGTGccgaatcacagggaatatacagcttcagcatgctgagtcctcccggcaaccgttgaccaagtcccgcaggcgctcaggggtgaggcgcgcg                                                            >  2:1059714‑M2/1‑28 (MQ=255)
                                                                                                                          tgtgATTCGGTAGCCCGTGCCGTGGGTGccgaatcacagggaatatacagcttcagcatgctgagtcctcccggcaaccgttgaccaagtcccgcaggcgctcaggggtgaggcgcgcg                                                            <  1:1059714‑M2/119‑92 (MQ=255)
                                                                                                                          tgtgATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGa                                                                                             >  1:1084094/1‑86 (MQ=255)
                                                                                                                          tgtgATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGa                                                                                             <  2:1084094/86‑1 (MQ=255)
                                                                                                                            tgATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCa                           >  2:470700/1‑150 (MQ=255)
                                                                                                                             gATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCaa                          <  2:144838/150‑1 (MQ=255)
                                                                                                                             gATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCATGCGGCGCGAAAGCGTTCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCaa                          <  1:561534/150‑1 (MQ=255)
                                                                                                                              aTTCGGTAGCCCGTGCCGTGGGTGccgaatcacagggaatatacagcttcagcatgctgagtcctcccggcaaccgttgaccaagtcccgcaggcgctcaggggtgaggcgcgcgtgcacctggcc                                                 <  1:107925‑M2/126‑103 (MQ=255)
                                                                                                                              aTTCGGTAGCCCGTGCCGTGGGTGccgaatcacagggaatatacagcttcagcatgctgagtcctcccggcaaccgttgaccaagtcccgcaggcgctcaggggtgaggcgcgcgtgcacctggcc                                                 >  2:107925‑M2/1‑24 (MQ=255)
                                                                                                                              aTTCGGTAGCCCGCGTCGCGGGTGCGGCCTCGGTCGACAACGCACGGCTTCGCGACGCCGACCTCCGCCAGTTGCCGCTGCACACCAAGCGCACCAGCTCGCGTGGGCCTTACTGGCGGGAGCCGATGAGCGAGCGCGGCAGTGCGCAAg                         >  2:561534/1‑150 (MQ=255)
                                                                                                                                 cGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCAAGGgc                      <  2:830280/150‑1 (MQ=255)
                                                                                                                                  ggTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTActggc                                                          >  1:473683/1‑113 (MQ=255)
                                                                                                                                  ggTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTActggc                                                          <  2:473683/113‑1 (MQ=255)
                                                                                                                                             gccgtgGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCAAGGGCGCCTGGGTTTc           <  1:495509/150‑1 (MQ=255)
                                                                                                                                                     gTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCAAGGGCGCCTGGGTTTCGGCCCGa    <  2:424809/150‑1 (MQ=255)
                                                                                                                                                       gCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCAACGGCACGCGTGGCCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCACGGGCGCCTGGGTTTCGGCCCGAtt  >  2:770003/1‑150 (MQ=255)
                                                                                                                                                       |                                                                                                                                                     
TGTGCCTGCTCGCCAGCGCTGGAGCTGGACGGCCAGGTGCACGCGCGCCTCACCCCTGAGCGCCTGCGGGACTTGGTCAACGGTTGCCGGGAGGACTCAGCATGCTGAAGCTGTATATTCCCTGTGATTCGGTAGCCCGTGCCGTGGGTGCCGACCAGGTTGCCGAGGCCCTGCTGCGCGAGGCCGAGCGCCGCCAGTTGCCGCTGGACATCCAGCGCACCAGCTCGCGTGGGCTTTACTGGCTGGAGCCGCTGATCGAGTGCGACAGTGCGCAAGGGCGCCTGGGTTTCGGCCCGATT  >  NC_002947/2488964‑2489262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.