| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2530738 | NA (NA) | 5 (0.120) | 4/238 | NT | 10.8% | intergenic (+114/‑67) | PP_2218/PP_2219 | transposase/hypothetical protein |
| ? | NC_002947 | 4908043 = | 44 (1.020) | coding (27/198 nt) | PP_4317 | hypothetical protein | |||||
AAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTT > NC_002947/4907895‑4908191 | ggtcatcaaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccgg < 2:1051700‑M2/2‑1 (MQ=255) gtcatcaaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGc < 2:926078‑M2/3‑1 (MQ=255) aaTAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGc > 1:472897/1‑150 (MQ=255) caaagccgccaaaaccaaaagaccttgaaatggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTGc > 1:309747‑M2/143‑150 (MQ=255) ggCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑a < 1:205488/150‑1 (MQ=255) ggCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑a < 2:867549/150‑1 (MQ=255) cAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑Agg < 1:591964/150‑1 (MQ=255) aaCTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAg < 2:987517/150‑1 (MQ=255) actgtactgtGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAgg < 2:293608/150‑1 (MQ=255) tgtgCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACggg > 2:473189/1‑150 (MQ=255) tgtgCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACggg > 1:375103/1‑150 (MQ=255) gCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCAt > 1:983736/1‑150 (MQ=255) gCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCAt < 1:597773/150‑1 (MQ=255) tgttgtTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTNCCGTTGCCGNTGCTCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTGCAGGACACCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATgg > 1:117344/1‑150 (MQ=255) gttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCa < 2:76278/150‑1 (MQ=255) tgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAgcgc > 1:719797/1‑150 (MQ=40) cccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGc < 1:372110‑M2/3‑1 (MQ=255) cccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGc > 2:372110‑M2/106‑108 (MQ=255) ccgttgccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAgg < 2:472897/150‑1 (MQ=39) cgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAgg > 1:259731/1‑150 (MQ=39) gttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCAt > 1:708181/1‑120 (MQ=39) gttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCAt < 2:708181/120‑1 (MQ=255) gttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTNGATCNTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGGAGGTGACGGGCCTGGATGCCCGTCAAGCGCTGAGGCCCCAGGa > 1:790/1‑150 (MQ=255) tgcctttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATg < 2:790/150‑1 (MQ=38) actttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCt > 1:124245‑M2/91‑95 (MQ=255) actttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCt < 2:124245‑M2/5‑1 (MQ=255) ccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGCCGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATggg < 1:95310/150‑1 (MQ=37) gttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGAATTTGG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGc < 1:982016/150‑1 (MQ=255) ttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGcc < 1:473189/150‑1 (MQ=39) gttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACgg < 1:682013/98‑1 (MQ=31) gttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACgg > 2:682013/1‑98 (MQ=31) gttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGt > 1:767382/1‑150 (MQ=11) gttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGt > 1:849921/1‑150 (MQ=11) gttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGt > 2:36544/1‑150 (MQ=11) aaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTg > 2:644929‑M2/72‑150 (MQ=255) aaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTCGCTCC‑CGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCt < 2:860967‑M2/79‑1 (MQ=255) gtaaccaaaaaacgctgcgcgcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTCGCT‑CCCGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCgg < 2:50169‑M2/84‑1 (MQ=255) tgatcttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGa < 2:1094740/150‑1 (MQ=31) caaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCtt > 1:698616‑M2/62‑67 (MQ=255) caaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCtt < 2:698616‑M2/6‑1 (MQ=255) aaaaacgctgcgctcccatcatccggcccccgcgctgcgctccggggttccctcactcaGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCACGTGCGACGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAgg < 1:630476‑M2/91‑1 (MQ=255) tcttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGc > 1:796436/1‑150 (MQ=32) tcttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGc > 1:336908/1‑150 (MQ=32) cttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGcc < 2:719797/150‑1 (MQ=32) cgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGa < 1:644929‑M2/96‑1 (MQ=255) ttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGa > 2:985277/1‑150 (MQ=32) atcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAggg < 1:985277/150‑1 (MQ=32) tcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAgggg > 2:169257/1‑150 (MQ=32) tcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCg > 1:265225/1‑150 (MQ=32) tcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGGcccctgcgctg > 1:961678/1‑143 (MQ=255) cttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgca > 2:981503/1‑150 (MQ=32) tgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgcagc < 2:579805/150‑1 (MQ=32) tcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAgcgcagcgca > 2:656931/1‑150 (MQ=32) ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg > 1:1046620/1‑150 (MQ=32) ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg > 2:944356/1‑150 (MQ=32) cTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGga < 1:331185/150‑1 (MQ=32) gggaggCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGgatgat < 2:930410/149‑1 (MQ=17) aggaggCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGgatgat < 1:765219/150‑1 (MQ=32) gCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAg < 2:265225/150‑1 (MQ=32) aGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGtt > 1:7117/1‑150 (MQ=32) | AAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑G‑AGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTT > NC_002947/4907895‑4908191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |