New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2683380 =44 (1.020)3 (0.080) 3/220 NT 7.5% intergenic (+13/+100) prpE/PP_2352 propionyl‑CoA synthetase/hypothetical protein
?NC_002947 2683465 = 36 (0.960)intergenic (+98/+15) prpE/PP_2352 propionyl‑CoA synthetase/hypothetical protein

CTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTGGTCATACAGCACAT  >  NC_002947/2683320‑2683613
                                                                                                                                                 |                                                                                                                                                      
gtGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAgg                                                                                                                                                    <  2:1080171/149‑1 (MQ=255)
cTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAgg                                                                                                                                                    <  2:1060529/150‑1 (MQ=255)
 tGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTAAGGc                                                                                                                                                   >  1:1115137/1‑150 (MQ=255)
     ggAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACtt                                                                                                                                               >  1:1035774/1‑149 (MQ=255)
     ggAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTg                                                                                                                                               >  1:663410/1‑150 (MQ=255)
              aGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAg                                                                                                                                      <  1:864759/150‑1 (MQ=255)
               gCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAgg                                                                                                                                     <  2:422862/150‑1 (MQ=255)
               gCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGCTGGTTCGGCAGACGACGGCGTGTAGGAGCGGTGTTATCCGCCAAAGGCCCATCTCCGGCACTGCAGGCTCAgg                                                                                                                                     >  2:945591/1‑150 (MQ=255)
                 ggTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAgggg                                                                                                                                   <  2:558612/150‑1 (MQ=255)
                  gTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAggggg                                                                                                                                  <  2:1035774/150‑1 (MQ=255)
                        gCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCt                                                                                                                            >  1:615475/1‑150 (MQ=255)
                        gCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCt                                                                                                                            >  1:863329/1‑150 (MQ=255)
                           gATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGt                                                                                                                         <  2:629191/150‑1 (MQ=255)
                           gATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGt                                                                                                                         <  1:174947/150‑1 (MQ=255)
                            aTTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTg                                                                                                                        >  1:710196/1‑150 (MQ=255)
                                  ccAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAgggg                                                                                                                                   <  1:19059/133‑1 (MQ=255)
                                  ccAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAgggg                                                                                                                                   >  2:19059/1‑133 (MQ=255)
                                  ccAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTg                                                                                                                  >  2:1031775/1‑150 (MQ=255)
                                   cggggCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGc                                                                                                                 <  1:731697/148‑1 (MQ=255)
                                   cAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGc                                                                                                                 <  2:638351/150‑1 (MQ=255)
                                           gTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGc                                                                                                                 <  2:797339/142‑1 (MQ=255)
                                           gTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGc                                                                                                                 >  1:797339/1‑142 (MQ=255)
                                               aTGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGt                                                                                                                         >  1:782831/1‑130 (MQ=255)
                                               aTGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGt                                                                                                                         <  2:782831/130‑1 (MQ=255)
                                                  gTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCgg                                                                                                 <  1:1087226/150‑1 (MQ=255)
                                                       aCCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGc                                                                                                                                                   >  1:910553/1‑96 (MQ=255)
                                                       aCCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGc                                                                                                                                                   <  2:910553/96‑1 (MQ=255)
                                                         cTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAg                                                                                                                                                     <  1:645792/92‑1 (MQ=255)
                                                         cTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAg                                                                                                                                                     >  2:645792/1‑92 (MQ=255)
                                                            GATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCa                                                                                      >  2:507618‑M1/1‑150 (MQ=255)
                                                             ATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAg                                                                                     <  1:829928‑M1/150‑1 (MQ=255)
                                                              TGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCGATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAgg                                                                                    >  1:286527‑M1/1‑150 (MQ=255)
                                                                 CCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCg                                                                                 <  1:983939‑M1/150‑1 (MQ=255)
                                                                  cctttcgcgggtaaacacgctcctacacgacggcctctgccgaaccaccgatgcgcgtgccgcccgcgaaagggccatcTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCgg                                                                                >  1:393080‑M2/80‑150 (MQ=255)
                                                                   ctttcgcgggtaaacccgctcctacacgacggcctctgccgaaccaccgatgcgcgtgccgcccgcgaaagggccatcTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGc                                                                               >  1:263772‑M2/79‑150 (MQ=255)
                                                                   CTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGc                                                                               <  2:252665‑M1/150‑1 (MQ=255)
                                                                    tttcgcgggtaaacccgctcctacacgacggcctctgccgaaccaccgatgcgcgtgccgcccgcgaaagggccatcTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGcc                                                                              >  2:217347‑M2/78‑150 (MQ=255)
                                                                        GCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACCCATCAGGTCGGCCAGCg                                                                          >  1:933692‑M1/1‑150 (MQ=255)
                                                                                   gcgcATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTAAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAgg                                                               <  2:1115137/150‑1 (MQ=255)
                                                                                     gcATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGct                                                             >  1:886226/1‑150 (MQ=255)
                                                                                               ttCGGCAGAGGCCGTCGTGTAGGAGCGGCTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGc                                                   <  1:945591/150‑1 (MQ=255)
                                                                                                tCGGCAGAGGCCGTAGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCCGCGGGTACGCCTCAGGTCGGCCAGCGGGCCGCCCAGGCTCTATTCCAGCg                                                  >  2:411875/1‑150 (MQ=255)
                                                                                                  ggCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGa                                                <  2:863329/150‑1 (MQ=255)
                                                                                                              cgtGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATg                                    <  2:829928/150‑1 (MQ=255)
                                                                                                               gtgtAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGa                                   <  1:828137/150‑1 (MQ=255)
                                                                                                                      aGCGGGTTTACCCGCGAAAGGGCCCTCTCACGCACTGCAGGCTCAGGGCGCAATCTGGTGCAGTTGCCCCACCCGCCTGCGGGTACGCATCAGTTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCAc                            <  1:411875/150‑1 (MQ=255)
                                                                                                                       gCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCAcc                           >  2:978163/1‑150 (MQ=255)
                                                                                                                       gCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCAcc                           >  2:948748/1‑150 (MQ=255)
                                                                                                                       gCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCAcc                           >  2:1023334/1‑150 (MQ=255)
                                                                                                                                  cgcgaaagggccatcTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCgatctcc                <  2:663410‑M2/135‑4 (MQ=255)
                                                                                                                                  cgcgaaagggccatcTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTg                <  2:711709‑M2/135‑1 (MQ=255)
                                                                                                                                         gggCCATCTCAGCCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCCCCCGCGGTACGAAAAACGCCGCGGCGGCCAGCGGGGCGCCCCGGATCACTTCCAGCGGATGTTTGCCTATTACAATCACCCGTCGATCCTGGTCATAc         <  1:252665/150‑1 (MQ=255)
                                                                                                                                             catcTCCGGCACTGCAGGCTCATGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTTCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTGGTCATACAGca     >  2:515540‑M2/5‑150 (MQ=255)
                                                                                                                                              atcTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTGGTCATACAGcac    <  2:983939‑M2/147‑1 (MQ=255)
                                                                                                                                                cTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTGGTCATACAGCACAt  <  2:615475‑M2/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                      
CTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTGGTCATACAGCACAT  >  NC_002947/2683320‑2683613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.