New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2691928	30 (0.690)	4 (0.100)	4/230	NT	12.1%	coding (46/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2691938	31 (0.790)					coding (56/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

TGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCAC  >  NC_002947/2691791‑2692082                                                                                                                                                    |                                                                                                                                                 tgGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGAAAGGAGACTCCGATGCGAACGAACCTTTCACATTGCTTCCTCTCAGGCCTGGGCCTGGCGTTGGCTTCcc                                                                                                                                                >  2:680425‑M2/1‑148 (MQ=255)   gTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccag                                                                                                                                              <  1:266761‑M2/150‑5 (MQ=255)      gTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCATCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcc                                                                                                                                           <  2:781852‑M2/150‑8 (MQ=255)                  cgTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACg                                                                                                                               <  1:345118/150‑1 (MQ=255)                      cgcTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGa                                                                                                                           <  1:971245/150‑1 (MQ=255)                          gccggccgGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAgg                                                                                                                       <  1:963993/150‑1 (MQ=255)                            cggccggGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGa                                                                                                                     <  1:874582/150‑1 (MQ=255)                                cggGCTTTACCGCGACACCCTCAGAGTGACCCTATGCAGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTAt                                                                                                                 >  1:932701/1‑150 (MQ=255)                                         ccGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACTGTGACAGGGAGTATCAGCACGAc                                                                                                        <  2:322281/150‑1 (MQ=255)                                                    tCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGa                                                                                             >  1:275142/1‑150 (MQ=255)                                                         ttGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCg                                                                                        <  2:395368/149‑1 (MQ=255)                                                              ccTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGAc                                                                                                  <  2:77022/135‑1 (MQ=255)                                                              ccTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGAc                                                                                                  >  1:77022/1‑135 (MQ=255)                                                              ccTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTg                                                                                   >  1:467964/1‑150 (MQ=255)                                                                tGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGcc                                                                                 >  2:293638/1‑150 (MQ=255)                                                                  gACTGGTAACCACGCAAGGAGACTCCTATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAg                                                                               <  2:360860/150‑1 (MQ=255)                                                                     tGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTc                                                                            >  1:12843/1‑150 (MQ=255)                                                                        tAACCACGAAAGGAAACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAAt                                                                         <  2:361037/150‑1 (MQ=255)                                                                                    gagaCTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTc                                                                                                                                                  <  2:944040/65‑1 (MQ=255)                                                                                    gagaCTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTc                                                                                                                                                  >  1:944040/1‑65 (MQ=255)                                                                                            gATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGcacgtcgggcacgtcggg                                                     >  1:636588/1‑150 (MQ=255)                                                                                              tGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGc                                                   <  1:493730/150‑1 (MQ=255)                                                                                                         cTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCGCCGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGGCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGt                                        <  2:266761/150‑1 (MQ=255)                                                                                                          tttCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTg                                       >  1:153681/1‑150 (MQ=255)                                                                                                            tcagactGCGTCTTCGCGGGCCTGGGCCTGGCGTTGGCGTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTAAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGcc                                     <  2:252104/144‑1 (MQ=255)                                                                                                                atTGCGTCCTAGCAGGCCTGGGCCTGGCGTTGGCTTCCAAGGCCCAGGCGGCCACGGTTACAGGGAGAATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTgg                                 >  2:434465/1‑150 (MQ=255)                                                                                                                     gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggc                                                                                                                                      <  2:237064‑M2/44‑13 (MQ=255)                                                                                                                     gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggc                                                                                                                                      >  1:237064‑M2/1‑32 (MQ=255)                                                                                                                     gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTg                                  >  1:44509/1‑144 (MQ=255)                                                                                                                     gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTg                                  <  2:44509/144‑1 (MQ=255)                                                                                                                      tCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGa                                               >  2:793484/1‑130 (MQ=255)                                                                                                                      tCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGa                                               <  1:793484/130‑1 (MQ=255)                                                                                                                         tCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagc                                          <  2:315574‑M2/132‑105 (MQ=255)                                                                                                                         tCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagc                                          >  1:315574‑M2/1‑28 (MQ=255)                                                                                                                            cAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGTCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTc                                           <  1:395789/128‑1 (MQ=255)                                                                                                                            cAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGTCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTc                                           >  2:395789/1‑128 (MQ=255)                                                                                                                                cctgggcctggCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgt                                                                                    <  1:284579‑M2/83‑63 (MQ=255)                                                                                                                                cctgggcctggCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgt                                                                                    >  2:284579‑M2/1‑21 (MQ=255)                                                                                                                                     gcctggCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCACATCGATCCGGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCt            >  1:412667/1‑150 (MQ=255)                                                                                                                                        tggCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGt         <  1:1033791/150‑1 (MQ=255)                                                                                                                                          gCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTc       <  1:777210/150‑1 (MQ=255)                                                                                                                                               ggCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCAc  >  2:928275/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                 TGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCAC  >  NC_002947/2691791‑2692082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.