New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3127833	46 (1.060)	3 (0.070)	3/242	NT	7.1%	coding (627/897 nt)	PP_2745	universal stress protein family protein
	?	NC_002947	= 3127877	35 (0.850)					coding (583/897 nt)	PP_2745	universal stress protein family protein

CACCAGGTGCAGGTGATCTGGCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGCGACCAGTATGCGCGCTGGCAGCGTCGTTTCAGC  >  NC_002947/3127728‑3128024                                                                                                                                                      |                                                                                                                                                       cACCAGGTGCAGGTGATCTGGCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTa                                                                                                                                                        <  1:671969/150‑1 (MQ=255)  aCCAGGTGCAGGTGATCTGGCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAg                                                                                                                                                       >  2:892346‑M2/1‑149 (MQ=255)   ccAGGTGCAGGTGATCTGGCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAgg                                                                                                                                                      <  2:259500‑M2/150‑3 (MQ=255)        tgcaggtgATCTGGCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTC‑AGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAggc                                                                                                                                                     >  2:1057304‑M2/1‑142 (MQ=255)        tgcaggtgATCTGGCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTC‑AGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAggc                                                                                                                                                     <  1:1057304‑M2/145‑4 (MQ=255)                   tGGCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAg                                                                                                                                      >  1:752153/1‑150 (MQ=255)                     gCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGtt                                                                                                                                    >  1:521448/1‑150 (MQ=255)                         gATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTgagc                                                                                                                                <  1:214596/150‑1 (MQ=255)                                  aCGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCg                                                                                                                       <  2:752153/150‑1 (MQ=255)                                    ggCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGtt                                                                                                                     <  1:259500/150‑1 (MQ=255)                                                tCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCa                                                                                                       >  2:1063042/1‑150 (MQ=255)                                                    cATGCGCTCCCCACCACGCCCGGACACTTCGTCAGCAAGTGCGTCTGGCGAGGCCACGGGTGCGGCGGCATAGGCAATGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGc                                                                                                   >  2:852789/1‑150 (MQ=255)                                                      tGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑Cg                                                                                                >  1:973881/1‑150 (MQ=255)                                                      tGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑Cg                                                                                                >  2:1023814/1‑150 (MQ=255)                                                                       ccGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCg                                                                               >  1:478808/1‑150 (MQ=255)                                                                         ggACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGtt                                                                             <  1:114715/150‑1 (MQ=255)                                                                         ggACATTTCCTCGGCCAGTTTCTCAGTCCAGGCCACGGGTGCGGCGGCATAGGCATCGAAGCTTGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGtt                                                                             <  2:564200/150‑1 (MQ=255)                                                                               ttCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCtt                                                                       <  2:478808/150‑1 (MQ=255)                                                                                  cTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCTGCAGATGCAGTTGCGACCTGCCGCGTTTTTCCAGTT‑‑CCTGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTc                                                                    >  1:805644/1‑150 (MQ=255)                                                                                  cTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGAt                                                                                      <  2:422108/132‑1 (MQ=255)                                                                                  cTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGAt                                                                                      >  1:422108/1‑132 (MQ=255)                                                                                   tCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCg                                                                   >  2:528072/1‑150 (MQ=255)                                                                                     ggCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGAt                                                                 >  2:834591/1‑150 (MQ=255)                                                                                      gCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATc                                                                >  2:18108/1‑150 (MQ=255)                                                                                        cAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAg                                                              >  1:881717/1‑150 (MQ=255)                                                                                              gtctgtcCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGTGCCTTGAGCTTGTCGATCAGCGGGTc                                                        <  1:996779/150‑1 (MQ=255)                                                                                              gtctgtcCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTc                                                        <  2:973479/150‑1 (MQ=255)                                                                                                 ggtcCTGGCCACGGGTGCGGCGGCATAGGCACCGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGCCGTTGAGCTTGTCGACCAGCGGGTCGTg                                                     <  2:456646/149‑1 (MQ=255)                                                                                                   tcCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAggcctggacagacaaactggccgaggaaatgtccggtcgtgcgcgcgagcgcatggcgacgtttgg                                                                                      <  2:293889‑M2/118‑67 (MQ=255)                                                                                                   tcCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAggcctggacagacaaactggccgaggaaatgtccggtcgtgcgcgcgagcgcatggcgacgtttgg                                                                                      >  1:293889‑M2/1‑52 (MQ=255)                                                                                                   tcCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGGTCGTAGGCCTGCAGCAGATGCAGCTGCGCCTTGCAACGGTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCt                                                   >  1:268622/1‑150 (MQ=255)                                                                                                     cAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAggcctggacagacaaactggccgaggaaatgtccggtcgtgcgcgcgagcgcatggcgacgtttggcggccgttatggcatcaagccagatcacctgcac                                                    <  2:606595‑M2/150‑101 (MQ=255)                                                                                                       ggCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGAc                                               <  2:713230/150‑1 (MQ=255)                                                                                                        gCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGAcc                                              <  1:1023814/150‑1 (MQ=255)                                                                                                         ccACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGTAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGAt                                                                                      <  1:1014969/109‑1 (MQ=255)                                                                                                         ccACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGTAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGAt                                                                                      >  2:1014969/1‑109 (MQ=255)                                                                                                                tGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGGTCGTAGGCCTGCAGCAGATGCGGTTGCGCCTTGCAGCGGTGTGCGGCTTCACCACTACGCTCTTGCAG‑‑CG‑GTTCGTGGAGCTTGTCGATCAGCGGGCCGTGCTCGGCCAGGTCCAc                                      >  1:130816/1‑150 (MQ=255)                                                                                                                 gcggcgGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGAAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACg                                     <  1:121003/150‑1 (MQ=255)                                                                                                                   ggcggcATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGc                                   <  2:521448/150‑1 (MQ=255)                                                                                                                     cggcATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGCGa                                 <  1:834591/150‑1 (MQ=255)                                                                                                                       gcATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCCGATGCAGTTGCGCCTTGCAGCGTTGTGCAAGTT‑‑TGAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGCGAcc                               <  1:520136/150‑1 (MQ=255)                                                                                                                                  gAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGCGACCAGTATgcgcgc                    >  2:690438/1‑150 (MQ=255)                                                                                                                                                gTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGCGACCAGTATGCGCGCTGGCAGCGTCGttt      <  1:545482/150‑1 (MQ=255)                                                                                                                                                ccgggTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGCGACCAGTATGCGCGCTGGCAGCGTCGttt      >  1:587869/5‑150 (MQ=255)                                                                                                                                                    gTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGCGACCAGTATGCGCGCTGGCAGCGTCGTTTCAGc  <  1:427124/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                       CACCAGGTGCAGGTGATCTGGCTTGATGCCATAACGGCCGCCAAACGTCGCCATGCGCTCGCGCGCACGACCGGACATTTCCTCGGCCAGTTTGTCTGTCCAGGCCACGGGTGCGGCGGCATAGGCAACGAAGCTGGCGCTGGGTTCGTAGGCCTGCAGCAGATGCAGTTGCGCCTTGCAGCGTTGTGCCAGTT‑‑CCAGTGC‑CGATTGCAGGATGTGGTCGTTGAGCTTGTCGATCAGCGGGTCGTGCTCGACCAGGTCCACGGCGACCAGTATGCGCGCTGGCAGCGTCGTTTCAGC  >  NC_002947/3127728‑3128024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.