New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3708303	36 (0.830)	4 (0.100)	4/238	NT	9.3%	coding (614/1563 nt)	actP‑III	acetate permease
	?	NC_002947	= 3708336	44 (1.080)					coding (581/1563 nt)	actP‑III	acetate permease

CCAAACCGAGGGAAATGGCGTCCACCGGGTTGGACAACAAGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATGCCGAACAGC  >  NC_002947/3708199‑3708482                                                                                                                                          |                                                                                                                                                   ccAAACCGAGGGAAATGGCGTCCACCGGGTTGGACAACAAGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAAc                                                                                                                                        >  1:955004/1‑150 (MQ=255)     aCCGAGGGAAATGGCGTCCACCGGGTTGGACAACAAGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGt                                                                                                                                    >  2:1109771/1‑150 (MQ=255)              aaTGGCGTCCACCGGGTTGGACAACAAGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGAAATCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATag                                                                                                                           <  1:620398/150‑1 (MQ=255)                tGGCGTCCACCGGGTTGGACAACAAGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATagca                                                                                                                         <  2:1096844/150‑1 (MQ=255)                                 gACNACAAGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTtgatg                                                                                                        >  2:703935/1‑150 (MQ=255)                                    aacaaGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATc                                                                                                     >  1:584175/1‑150 (MQ=255)                                      caaGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTg                                                                                                   >  1:388568/1‑150 (MQ=255)                                         gccgccTGGGGCCATGCTCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAGGCCGAAGTGCTTGAGCACCATGAACGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCAc                                                                                                >  2:17735/1‑150 (MQ=255)                                             ccTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATagca                                                                                                                         >  1:545248/1‑121 (MQ=255)                                             ccTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATagca                                                                                                                         <  2:545248/121‑1 (MQ=255)                                             ccTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAg                                                                                            <  2:960013/150‑1 (MQ=255)                                             ccTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAg                                                                                            >  1:70536/1‑150 (MQ=255)                                                   gCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGgtggtg                                                                                      >  1:402845/1‑150 (MQ=255)                                                    ccATGATCGCCTGGCCCTTGGCATGCCCAGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGtggtgg                                                                                     >  1:759834/1‑150 (MQ=255)                                                       tGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGa                                                                                  <  1:531124/150‑1 (MQ=255)                                                         aTCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCa                                                                                                 <  2:105667/133‑1 (MQ=255)                                                         aTCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCa                                                                                                 >  1:105667/1‑133 (MQ=255)                                                          tCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGTCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCa                                                                               >  2:1115249/1‑150 (MQ=255)                                                                 gCCCTTGGCATGCACGGCCACCGCACTGTCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCAcc                                                                        <  1:1115249/150‑1 (MQ=255)                                                                 gCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCAcc                                                                        >  2:658773/1‑150 (MQ=255)                                                                   ccTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGa                                                                      >  1:626066/1‑150 (MQ=255)                                                                       ggCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGt                                                                  <  2:626066/150‑1 (MQ=255)                                                                        gCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTg                                                                 <  2:994158/150‑1 (MQ=255)                                                                         cATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGa                                                                >  2:610595/1‑150 (MQ=255)                                                                             cACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTg                                                                                                   <  1:496283/111‑1 (MQ=255)                                                                             cACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTg                                                                                                   >  2:496283/1‑111 (MQ=255)                                                                             cACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATa                                                            <  2:413174/150‑1 (MQ=255)                                                                                        cACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCa                                                 <  2:402845/150‑1 (MQ=255)                                                                                           tGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCa                                              >  2:784376/1‑150 (MQ=255)                                                                                            ggCAAACATGCCCTCGGTGCTGAAGCCGAAGTGATTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCAc                                             <  1:500101/150‑1 (MQ=255)                                                                                               aaaCATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAaggccatgtttgccagtgcggtggccgtgcatgccaagggccaggcgatcatggccccaggcggcttgttgtccaacccggtggacgccatttccctcggtttggg                                          <  1:1073472‑M2/150‑107 (MQ=255)                                                                                                    tGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCa                                     <  1:610595/150‑1 (MQ=255)                                                                                                    tGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCa                                     <  2:70536/150‑1 (MQ=255)                                                                                                         tCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATc                                >  2:118920/1‑150 (MQ=255)                                                                                                            gTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGCGCCTGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACg                             <  1:868683/150‑1 (MQ=255)                                                                                                            gTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACg                             <  2:955004/150‑1 (MQ=255)                                                                                                            gTGCTGAAGCCGAAGTGCTTGAGCACC‑‑GAggccatgtttgccagtgcggtggccgtgcatgccaagggccaggcgatcatggccccaggcggcttgttgtccaacccggtggacgccatttccctcggtttgggcatgatgttcggcacc                           <  2:252532‑M2/150‑122 (MQ=255)                                                                                                             tGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACgg                            >  1:118131/1‑150 (MQ=255)                                                                                                                  aaGCCGAAGTGCTTGAGCACCATGAaggccatgtttgccagtgcggtggccgtgcatgccaagggccaggcgatcatggccccaggcggcttgttgtccaacccgg                                                                   <  1:353169‑M2/106‑82 (MQ=255)                                                                                                                  aaGCCGAAGTGCTTGAGCACCATGAaggccatgtttgccagtgcggtggccgtgcatgccaagggccaggcgatcatggccccaggcggcttgttgtccaacccgg                                                                   >  2:353169‑M2/1‑25 (MQ=255)                                                                                                                  aaGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTAc                       >  1:530087/1‑150 (MQ=255)                                                                                                                      cGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGt                   >  2:914238/1‑150 (MQ=255)                                                                                                                           tGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTg              >  2:457827/1‑150 (MQ=255)                                                                                                                            gCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGa             >  2:516518/1‑150 (MQ=255)                                                                                                                            gCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGa             <  1:17735/150‑1 (MQ=255)                                                                                                                            gCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGa             <  1:1109771/150‑1 (MQ=255)                                                                                                                              ttGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATg           >  2:934515/1‑150 (MQ=255)                                                                                                                               tGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATGc          <  1:457827/150‑1 (MQ=255)                                                                                                                                   cACCAGGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATGCCGaa      <  1:591083/150‑1 (MQ=255)                                                                                                                                      cATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATGc          <  1:480158/143‑1 (MQ=255)                                                                                                                                      cATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATGc          >  2:480158/1‑143 (MQ=255)                                                                                                                                      cATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATGCCGAAcag   >  2:854766/1‑150 (MQ=255)                                                                                                                                       aTGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATGCCGAAcagc  <  2:880916/150‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                   CCAAACCGAGGGAAATGGCGTCCACCGGGTTGGACAACAAGCCGCCTGGGGCCATGATCGCCTGGCCCTTGGCATGCACGGCCACCGCACTGGCAAACATGGCCTCGGTGCTGAAGCCGAAGTGCTTGAGCACCATGAAGGCCATGAAACTGGTGCCTGATAGCAGCATTACCGCCTTGATGATCTGCACCCAGGTGGTGGCGAGCATGCCACCGAAGGTGACATAGGAAACCATCAGCACCCCGACCAGCATCACGGCGTACAGGTAGCTGATGCCGAACAGC  >  NC_002947/3708199‑3708482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.