New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3750171 =	52 (1.200)	3 (0.070)	3/240	NT	6.1%	coding (212/456 nt)	PP_3314	HSP20 family heat shock protein
	?	NC_002947	3750238 =	43 (1.050)					coding (145/456 nt)	PP_3314	HSP20 family heat shock protein

GGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTAAGAAGGGA  >  NC_002947/3750089‑3750373                                                                                                                                                      |                                                                                                                                        ggAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACAtt                                                                                                                                         >  2:681083/1‑150 (MQ=255) gaactgcaacatgtgctgggaacggggctcgggcgcccaggcagcattcgtgccttggccagtggtgcttttcctgccatcaATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACAtt                                                                                                                                         >  1:668460‑M1/83‑150 (MQ=255)     cAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATg                                                                                                                                     >  1:246246/1‑150 (MQ=255)      aaTTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATgg                                                                                                                                    >  2:911865/1‑150 (MQ=255)      aaTGGCCCTCCTGCTGGCAGATCGCGTGCCGGCGCTCGCCGGAAAGCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATgg                                                                                                                                    <  2:177718/150‑1 (MQ=255)         tGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAg                                                                                                                                 <  1:158990/150‑1 (MQ=255)             ctcctGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGaaa                                                                                                                             >  2:712484/1‑150 (MQ=255)              tcctGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGaaaa                                                                                                                            >  2:4836/1‑150 (MQ=255)                  gCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGcac                                                                                                                        <  1:541192/150‑1 (MQ=255)                        tgcGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTgg                                                                                                                  <  2:118206/150‑1 (MQ=255)                            cgcgGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCaa                                                                                                              <  1:712484/150‑1 (MQ=255)                            cgcgGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCaa                                                                                                              <  1:911865/150‑1 (MQ=255)                                 gCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCAc                                                                                                         <  2:1008303/150‑1 (MQ=255)                                    ggCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGaa                                                                                                      <  1:1049978/150‑1 (MQ=255)                                     gcgcTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAt                                                                                                     <  1:14058/150‑1 (MQ=255)                                      cgcTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAtg                                                                                                    <  1:681083/150‑1 (MQ=255)                                        cTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAAtgct                                                                                                  <  1:580115/150‑1 (MQ=255)                                                  aTCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGgcgc                                                                                        >  1:995189/1‑150 (MQ=255)                                                  aTCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGAACTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGgcgc                                                                                        <  1:247037/150‑1 (MQ=255)                                                    cGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGACCAAGGCACGAATGCTGCCTGGGCGccc                                                                                      <  2:46988/150‑1 (MQ=255)                                                              ccTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGCCCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCCCTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt                                                                            <  2:435737/150‑1 (MQ=255)                                                              ccTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt                                                                            >  1:799783/1‑150 (MQ=255)                                                              ccTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGtt                                                                            >  1:557255/1‑150 (MQ=255)                                                                  ggTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCa                                                                        <  1:136336/150‑1 (MQ=255)                                                                          tGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGAAAAAGCACCACTGGCCAAGGCACGAATTCTGCCTGCGCGCCCGAGCCCCGTTCCCAGCACATGt                                                                <  2:547411/150‑1 (MQ=255)                                                                           gCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGGGCCCCGTTCCCAGCACATGtt                                                               <  1:994772/150‑1 (MQ=255)                                                                             aGATCGATGTGGCTCGGGTCAACGCCGGGAACGAAGGGCTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATCGCCGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGTCGCCCGAGCCCCCTTCCCAGCACATGTTGc                                                             >  2:525603/1‑150 (MQ=255)                                                                              gATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCa                                                            <  2:1109047/150‑1 (MQ=255)                                                                                  aatgtcgcgagcacgccatcgagcatggaggtctacgccttcgttcccggcgttgacccgagcgacatTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTc                                                        >  1:668460‑M2/69‑150 (MQ=255)                                                                                     gtcgcgagcacgccatcgagcatggaggtctacgccttcgttcccggcgttgacccgagcgacatTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTg                                                              <  1:941736‑M2/76‑1 (MQ=255)                                                                                     gtcgcgagcacgccatcgagcatggaggtctacgccttcgttcccggcgttgacccgagcgacatTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTg                                                              >  2:941736‑M2/66‑141 (MQ=255)                                                                                        GCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTg                                                  <  1:321166‑M1/150‑1 (MQ=255)                                                                                                 aaCGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTtctc                                         <  2:113358/150‑1 (MQ=255)                                                                                                 aaCGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTtctc                                         <  2:995189/150‑1 (MQ=255)                                                                                                      cGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACt                                    >  1:892907/1‑150 (MQ=255)                                                                                                        ggAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCg                                  <  2:321166/150‑1 (MQ=255)                                                                                                              aaGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGc                                                                                  <  2:824150/96‑1 (MQ=255)                                                                                                              aaGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGc                                                                                  >  1:824150/1‑96 (MQ=255)                                                                                                               aGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGAAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCACGAGCCCCGTTCCCAGCACATGTCGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCg                           >  1:570520/1‑150 (MQ=255)                                                                                                                   gTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAgg                                                                                                            <  2:998486/65‑1 (MQ=255)                                                                                                                   gTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAgg                                                                                                            >  1:998486/1‑65 (MQ=255)                                                                                                                          tCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGAc                >  2:199733/1‑150 (MQ=255)                                                                                                                           ccATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGCGCTTCTCGAACTCGGCAATCGGATCGCTCGACa               >  1:15725/1‑150 (MQ=255)                                                                                                                             aTGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATc                            >  2:700443/1‑135 (MQ=255)                                                                                                                             aTGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATc                            <  1:700443/135‑1 (MQ=255)                                                                                                                               gCTCGATCGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCGAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTCGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGAtt           <  2:570520/150‑1 (MQ=255)                                                                                                                                    aTGGCGTGCTCGCGACATTGATTGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTaagaa      <  2:557255/150‑1 (MQ=255)                                                                                                                                     tGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTaagaag     <  1:4836/150‑1 (MQ=255)                                                                                                                                      ggCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTAAGAAgg    <  2:246246/150‑1 (MQ=255)                                                                                                                                        cGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTAAGAAGGGa  <  2:892907/150‑1 (MQ=255)                                                                                                                                                    atTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGa                         >  2:627459‑M2/3‑115 (MQ=255)                                                                                                                                                    atTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGa                         <  1:627459‑M2/113‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                        GGAGCAATTGCCCTCCTGCGTGCTGCGCGCGGGCCGGCGCTCGCCGGAAATCGATAGCAGGCCTCGGTGAATCTGCAGATCGATGTCGCTCGGGTCAACGCCGGGAACGAAGGCGTAGACCTCCATGCTCGATGGCGTGCTCGCGACATTGATGGCAGGAAAAGCACCACTGGCCAAGGCACGAATGCTGCCTGGGCGCCCGAGCCCCGTTCCCAGCACATGTTGCAGTTCGCGCTGGAGCTTCTCGAACTCGGCAATCGGATCGCTCGACAGATTAAGAAGGGA  >  NC_002947/3750089‑3750373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.