New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4116129 =	42 (0.970)	3 (0.070)	3/240	NT	7.6%	coding (501/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_002947	4116228 =	33 (0.810)					coding (402/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor

AATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGAAGATCTG  >  NC_002947/4116081‑4116377                                                                                                                                                    |                                                                                                                                                      cagaccggccctgagttcgtgatcgaagtggtcgacaacctcgatgccGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGggcatcggc                                                                                                                                                     >  2:72871‑M1/49‑150 (MQ=255)        gccctgagttcgtgatcgaagtggtcgacaacctcgatgccGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAgg                                                                                                                                              >  1:778798‑M1/42‑150 (MQ=255)        cgcCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAgg                                                                                                                                              >  2:449931/1‑150 (MQ=255)                    atctcgatctTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACt                                                                                                                                  >  2:352558/1‑150 (MQ=255)                             ttCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACg                                                                                                                         >  2:219514/1‑150 (MQ=255)                               cATCCCCAACCCGGCGAGGATGCCCGACAGGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTTGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGaa                                                                                                                       <  1:539876/150‑1 (MQ=255)                                    ccAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGa                                                                                                                              >  2:131469/1‑138 (MQ=255)                                    ccAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAg                                                                                                                  >  2:1015140/1‑150 (MQ=255)                                    ccAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGGCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGa                                                                                                                              <  1:131469/138‑1 (MQ=255)                                       cctcgatgccgatgcccaagggttgctgatgccggtgtcggacaccagcacctatatccccggcaaggacctgccgctggagcagaccattgccaacatgtcgggcatcGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGc                                                                                                               >  1:778798‑M2/110‑150 (MQ=255)                                              gccgatgcccaagggttgctgatgccggtgtcggacaccagcacctatatccccggcaaggacctgccgctggagcagaccattgccaacatgtcgggcatcGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTg                                                                                                        >  2:72871‑M2/103‑150 (MQ=255)                                                 GATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGcac                                                                                                     <  1:678529‑M1/150‑1 (MQ=255)                                                      CCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGATCCGTTCTGCACCACCt                                                                                                <  2:758668‑M1/150‑1 (MQ=255)                                                            tGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCAGCATCAGCAACCCTTGGTCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTa                                                                                          <  2:330783/150‑1 (MQ=255)                                                             gTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTAc                                                                                         <  2:1114772/150‑1 (MQ=255)                                                                   aaTGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCa                                                                                   >  2:525139/1‑150 (MQ=255)                                                                    aTGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAg                                                                                                                  <  2:732868/118‑1 (MQ=255)                                                                    aTGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAg                                                                                                                  >  1:732868/1‑118 (MQ=255)                                                                     tGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGc                                                                                 <  1:194020/150‑1 (MQ=255)                                                                              ccAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATgg                                                                        >  2:205681/1‑150 (MQ=255)                                                                                    gCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCa                                                                  <  1:287803/150‑1 (MQ=255)                                                                                    cagcacctatatccccggcaaggacctgccgctggagcagaccattgccaacatgtcgggcatcGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCa                                                                  <  1:72871‑M2/86‑1 (MQ=255)                                                                                      aGGTCCTTGGCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGGAGCCCTTGGGCATCGGCAGCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACAACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAgg                                                                >  2:365216/1‑150 (MQ=255)                                                                                        gTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGGATCAGCAACCCTTGggcatcggcat                                                                                                                                                   >  1:123347/1‑65 (MQ=255)                                                                                        gTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGGATCAGCAACCCTTGggcatcggcat                                                                                                                                                   <  2:123347/65‑1 (MQ=255)                                                                                        gTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGAt                                                              >  2:202470/1‑150 (MQ=255)                                                                                         tCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGAt                                                                                                                             <  2:224889/86‑1 (MQ=255)                                                                                         tCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGAt                                                                                                                             >  1:224889/1‑86 (MQ=255)                                                                                             tGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTg                                                                                                                                           <  2:358285/68‑1 (MQ=255)                                                                                             tGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTg                                                                                                                                           >  1:358285/1‑68 (MQ=255)                                                                                               ccGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGa                                                       <  2:1096294/150‑1 (MQ=255)                                                                                                 ggggATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACg                                                     <  1:449931/150‑1 (MQ=255)                                                                                                 ggggATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACg                                                     >  1:158385/1‑150 (MQ=255)                                                                                                          ggTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGGCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACAATTCTAACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTc                                            <  1:758668/150‑1 (MQ=255)                                                                                                           gTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCg                                           >  1:271155/1‑150 (MQ=255)                                                                                                                        acacCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCgg                              <  2:271155/150‑1 (MQ=255)                                                                                                                        acacCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCgg                              <  2:207159/150‑1 (MQ=255)                                                                                                                          acCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCa                                                                  <  1:189478/112‑1 (MQ=255)                                                                                                                          acCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCa                                                                  >  2:189478/1‑112 (MQ=255)                                                                                                                            cGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACC‑TTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGt                         <  1:1015140/150‑1 (MQ=255)                                                                                                                                    gCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCt                  >  1:1019836/1‑150 (MQ=255)                                                                                                                                     cAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACCCCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTg                 >  2:212902/1‑150 (MQ=255)                                                                                                                                         ccTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGAc                    <  1:719898/143‑1 (MQ=255)                                                                                                                                         ccTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGAc                    >  2:719898/1‑143 (MQ=255)                                                                                                                                           ttGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCtt           <  1:139174/150‑1 (MQ=255)                                                                                                                                              ggcatcGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGaa        <  1:202470‑M2/144‑1 (MQ=255)                                                                                                                                               gcatcGGCATCGAGGTTGTCGACCACTTCGATCCCGACTTCTGGGCCGGTCGCAACCACCTTTATTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGAAg       >  1:570570‑M2/6‑150 (MQ=255)                                                                                                                                                    ggcatcgAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGAAGATCTg  <  1:886817/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      AATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGAAGATCTG  >  NC_002947/4116081‑4116377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.