New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4247312 =	43 (0.990)	4 (0.100)	4/246	NT	8.4%	coding (649/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	4247350 =	46 (1.100)					coding (611/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

GTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTC  >  NC_002947/4247210‑4247495                                                                                                                                             |                                                                                                                                                  gTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCa                                                                                                                                          <  1:930480/150‑1 (MQ=255)  tGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAg                                                                                                                                         <  1:1104859/150‑1 (MQ=255)   ggCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAgg                                                                                                                                        <  2:1120746/150‑1 (MQ=255)                 cagcaAGCCCTTGCCGGCTATGTTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAg                                                                                                                          <  2:342228/150‑1 (MQ=255)                         ccTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTcgc                                                                                                                  >  1:498492/1‑150 (MQ=255)                         ccTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTcgc                                                                                                                  >  2:859823/1‑150 (MQ=255)                          cTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGc                                                                                                                                              <  1:96196/121‑1 (MQ=255)                          cTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGc                                                                                                                                              >  2:96196/1‑121 (MQ=255)                          cTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTcgcg                                                                                                                 >  1:787843/1‑150 (MQ=255)                           ttGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCgg                                                                                                                >  2:318438/1‑150 (MQ=255)                                ggCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACgg                                                                                                           <  1:128532/150‑1 (MQ=255)                                ggCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACgg                                                                                                           <  1:319213/150‑1 (MQ=255)                                    tggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgcCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGc                                                                                                                                      <  1:1064097‑M1/52‑1 (MQ=255)                                    tggtacgccgtcccgggcgtggccagccgtgccgcgaaaccctcgagcaggctgccctgaagcttgcCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGc                                                                                                                                      >  2:1064097‑M1/68‑119 (MQ=255)                                             aaCAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCg                                                                                              <  2:589425/150‑1 (MQ=255)                                               cAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCggg                                                                                            >  1:1070844/1‑150 (MQ=255)                                                agagGCGCTGCTAGCGGTGTACTTAGTTGCTGCAACTGCTCAGCCGCGTGCAACGAGCCAACCCCGGCCATGAACAGAGGACGCTGGGCGGCGGCAAGCTTCACGGCAGCCTGCTCGCGGGTTCCGCGGCACGGCTGGCCACGCCCGGGa                                                                                           >  2:15246/1‑150 (MQ=255)                                                                      tGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTcc                                                                     >  1:371592/1‑150 (MQ=255)                                                                      tGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTcc                                                                     >  1:812293/1‑150 (MQ=255)                                                                        aGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTCTCGCGGCACGCCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAg                                                                   <  1:232870/150‑1 (MQ=255)                                                                          ttGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTc                                                                 <  2:498492/150‑1 (MQ=255)                                                                             ctgcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCg                                                              >  1:826699/1‑150 (MQ=255)                                                                             ctgcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCg                                                              <  2:328440/150‑1 (MQ=255)                                                                              ttcAACTTCTCAGCCGCGTTCAACGCGCCACCCCCGGCAATGATCATCGGCCGCTGGGCGGCGGCAAGCGTCAGGGCAGCCTGCGCGAGGGTTGCGCTGCACCGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCgg                                                             >  2:500296/3‑150 (MQ=255)                                                                              tgcAACTGCTCAGCCGCGTGCAACGCGCCCCCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCgg                                                             >  2:381405/1‑150 (MQ=255)                                                                              tgcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGACCGGCTGGACACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCgg                                                             >  1:73756/1‑150 (MQ=255)                                                                               gcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGc                                                            >  1:813882/1‑150 (MQ=255)                                                                               gcAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCATGAATGAGATTCAAGCTTTTCGACTAACGACGCCCTTGATTGCGTACCACCTCACCGCTCCAGTCCCGGc                                                            <  1:300511/150‑1 (MQ=255)                                                                                 aaCTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTg                                                          >  1:382517/1‑150 (MQ=255)                                                                                    tGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGccc                                                                                               <  1:193914/110‑1 (MQ=255)                                                                                    tGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGccc                                                                                               >  2:193914/1‑110 (MQ=255)                                                                                       tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAgg                                                                                                                                        >  1:1117328/1‑66 (MQ=255)                                                                                       tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAgg                                                                                                                                        <  2:1117328/66‑1 (MQ=255)                                                                                       tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGAt                                                    >  1:919494/1‑150 (MQ=255)                                                                                       tCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGAt                                                    <  1:859823/150‑1 (MQ=255)                                                                                         gccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTacca                                                                                 <  1:1064097‑M2/67‑1 (MQ=255)                                                                                         gccctgaagcttgccgccgcccagcggcctatgatcattgccgggggtggcgGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTacca                                                                                 >  2:1064097‑M2/53‑119 (MQ=255)                                                                                         aGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGATCGATgc                                                  <  2:655398/150‑1 (MQ=255)                                                                                           ccGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgccg                                                <  2:299192/150‑1 (MQ=255)                                                                                           ccGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATgccg                                                >  1:450665/1‑150 (MQ=255)                                                                                                 gCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCa                                          <  2:813882/150‑1 (MQ=255)                                                                                                  cAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCAc                                         >  1:453624/1‑150 (MQ=255)                                                                                                    aCGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGt                                       >  2:505840/1‑150 (MQ=255)                                                                                                       cgccgcccagcggcctatgatcattgccgggggtggcgGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGt                                       <  2:288524‑M2/109‑1 (MQ=255)                                                                                                       cgccgcccagcggcctatgatcattgccgggggtggcgGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGt                                       >  1:288524‑M2/39‑147 (MQ=255)                                                                                                          CACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAggg                                 >  2:371592‑M1/1‑150 (MQ=255)                                                                                                             ccccGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCa                              >  2:1042747/1‑150 (MQ=255)                                                                                                               ccGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCAcc                            >  2:315565/1‑150 (MQ=255)                                                                                                                   cAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCACCGaaa                        >  2:737305/1‑150 (MQ=255)                                                                                                                      tGATCATAGGCCGACGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGACCGGGACGGCGTATCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCACCGAAAtgt                     <  1:500296/150‑1 (MQ=255)                                                                                                                       gATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCACCGAAAtgtg                    >  1:959727/1‑150 (MQ=255)                                                                                                                       gATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCACCGAAAtgtg                    <  2:382517/150‑1 (MQ=255)                                                                                                                                 cGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCACCGAAATGTGCACCGGgcgc          >  2:147413/1‑150 (MQ=255)                                                                                                                                         ggcgGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTc  <  2:826699‑M2/146‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                  GTGGCGCGTCTGGTGGCAGCAAGCCCTTGCCGGCCACGCTGGTGAACAGAGGCGCTGCCAGCCGTGTACTGAGTTGCTGCAACTGCTCAGCCGCGTGCAACGCGCCACCCCCGGCAATGATCATAGGCCGCTGGGCGGCGGCAAGCTTCAGGGCAGCCTGCTCGAGGGTTTCGCGGCACGGCTGGCCACGCCCGGGACGGCGTACCACCTCACCGCTCCAGTCCCGGCTGACCGATGCCGCCAGCACGTCCAGGGGCACCGAAATGTGCACCGGGCGCGGTCGTTC  >  NC_002947/4247210‑4247495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.