| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4604060 | 23 (0.530) | 8 (0.200) | 8/240 | NT | 27.2% | intergenic (+1345/‑157) | PP_4074/PP_4076 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 4604072 | 21 (0.510) | intergenic (+1357/‑145) | PP_4074/PP_4076 | hypothetical protein/hypothetical protein | |||||
CGTCAATCGCCTGGCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCGCGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGA > NC_002947/4603923‑4604210 | cGTCAATCGCCTGGCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCg < 1:1001568/150‑1 (MQ=255) tCAATCGCCTGGCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGtc < 1:1000595‑M2/150‑3 (MQ=255) tGGCCCACTACATCGAGGTGCTGCAGCGCGAGCAGAGCGGCAGCGGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGc < 2:506156/150‑1 (MQ=255) gCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGt < 2:468454/150‑1 (MQ=255) ggTGCTGCAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGa < 2:452940/150‑1 (MQ=255) gcAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGtctc < 1:374606/150‑1 (MQ=255) aGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGACGGCTGCGCA‑‑CAtcggccgaagggttttc > 2:391983‑M2/1‑106 (MQ=255) aGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGACGGCTGCGCA‑‑CAtcggccgaagggttttc < 1:391983‑M2/123‑18 (MQ=255) gCGACGGGACGTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCa < 2:78236/150‑1 (MQ=255) gCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCa > 1:594635/1‑150 (MQ=255) aCGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGt > 2:755746/1‑150 (MQ=255) gggACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGACGGCCGCTGCGTGATGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGtct > 2:606416/1‑150 (MQ=255) aCCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTctcgc > 1:751793/1‑150 (MQ=255) ttGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAg > 2:405631/1‑140 (MQ=255) ttGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAg < 1:405631/140‑1 (MQ=255) tCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGGCTCGCTCGCCGTg > 2:218860/1‑150 (MQ=255) aacaaATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGtc < 2:703217/129‑1 (MQ=255) aacaaATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGtc > 1:703217/1‑129 (MQ=255) aaaTAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTc > 1:808137/1‑150 (MQ=255) aaaTAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTc < 2:594635/150‑1 (MQ=255) aTAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCaa > 2:772863/1‑150 (MQ=255) cAAGCAATATGTCACCGACAAGGAAAACCCTTCGGCCGATA‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCTAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGCACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACAt > 2:681116/1‑150 (MQ=21) aGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGTGAGCTCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATgg < 2:651191/150‑1 (MQ=255) ccTTCGGCCGATG‑‑TGCGCAGCCGtcggccgaagggttttcctggtcggcgacgtattgcttgatctatttgttgagttcggactcaaggtcccgtcgctccttccagctgc < 2:803043‑M2/111‑89 (MQ=255) ccTTCGGCCGATG‑‑TGCGCAGCCGtcggccgaagggttttcctggtcggcgacgtattgcttgatctatttgttgagttcggactcaaggtcccgtcgctccttccagctgc > 1:803043‑M2/1‑23 (MQ=255) ttCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTctcgctc < 2:679786/94‑1 (MQ=255) ttCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTctcgctc > 1:679786/1‑94 (MQ=255) ttCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCGCGAACTTCGAAATTTCCCTGGTAgg > 2:1020069/1‑150 (MQ=255) gCCGATG‑‑TGCGCAGCCGtcggccgcagggttttcctggtcggcgacgtattgcttgatctatttgttgagttcgcaagtggacccatgtcgctccttccagctgccgatctgctcgcgctgcagcaccttgatgtagtgggccaggcgat < 1:748371‑M2/150‑134 (MQ=255) ccGATG‑‑TGCGCAGCCGtcggccgaagggttttcctggtcggcgacgtattgcttgatctatttgttgagttcggactcaaggtcccgtcgctccttccagctgccgatctgctc < 2:585128‑M2/114‑99 (MQ=255) ccGATG‑‑TGCGCAGCCGtcggccgaagggttttcctggtcggcgacgtattgcttgatctatttgttgagttcggactcaaggtcccgtcgctccttccagctgccgatctgctc > 1:585128‑M2/1‑16 (MQ=255) tg‑‑tgCGCAGCCGtcggccgaagggttttcctggtcggcgacgtattgcttgatctatttgttgagttcggactcaaggtcccgtcgctccttccagctgccgatctgctcgcgctgcagcaccttgatgtagtgggccaggcgattgacg < 1:698475‑M2/150‑139 (MQ=255) | CGTCAATCGCCTGGCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGGGACCTTGAGTCCGAACTCAACAAATAGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATG‑‑TGCGCAGCCGTCGGCCGCTGCGTGCTGCCAGGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCGCGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGA > NC_002947/4603923‑4604210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |