New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5196165	47 (1.080)	3 (0.070)	3/238	NT	6.6%	coding (398/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	= 5196181	41 (1.010)					coding (382/690 nt)	ybgJ	allophanate hydrolase subunit 1

CGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAG  >  NC_002947/5196032‑5196327                                                                                                                                                      |                                                                                                                                                   cGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCaaa                                                                                                                                                    <  2:166504/150‑1 (MQ=255)       tGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTAGCCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg                                                                                                                                              >  1:1093446‑M2/1‑144 (MQ=255)       tGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg                                                                                                                                              >  1:786940‑M2/1‑144 (MQ=255)       tGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg                                                                                                                                              <  2:629150‑M2/150‑7 (MQ=255)       tGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg                                                                                                                                              >  2:921265‑M2/1‑144 (MQ=255)       ggcCGGGTAGGCCGCCGTCTGGCGATCGGCACTACCTATGCTGGGCGTCGTCGCGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgg                                                                                                                                              >  2:737978‑M2/2‑144 (MQ=255)             gTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATc                                                                                                                                        <  2:481128/150‑1 (MQ=255)              tAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATcg                                                                                                                                       >  2:1025342/1‑150 (MQ=255)              tAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGAAGAGGGCTGGACAGGCTCTCGTCGACCAGGCCCATAAAGCCGAAACCCGGTGCGAAGACCAGGGCAAACACCGGGTAATcg                                                                                                                                       >  2:89465/1‑150 (MQ=255)                  ccgccgTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGtt                                                                                                                                   <  2:817262/150‑1 (MQ=255)                        tCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCTCTTGCGTGGGGTACTCAGACGAGGCGGCGGCTCCCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGt                                                                                                                             <  1:860837/150‑1 (MQ=255)                          aaccgcTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACACAGGGAGAAGCCCAGGGCAGACAGCGGGTAATCGCGTTCACCGTGc                                                                                                                           >  1:587861/4‑150 (MQ=255)                             cgcTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAg                                                                                                                        <  2:247924/150‑1 (MQ=255)                              gcTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGc                                                                                                                       >  1:428020/1‑150 (MQ=255)                                  ggCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAAc                                                                                                                   >  1:268954/1‑150 (MQ=255)                                        aCCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAAtctc                                                                                                             <  2:428020/150‑1 (MQ=255)                                         cccACGCCGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGCAACGGCTCCTGAAGCCGAACCCTTTTGCGAAGCCCAGGGCAAACCCCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTcc                                                                                                            <  1:688931/150‑1 (MQ=255)                                          ccACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCTCGTTCACCGTGCAAGCGAACAATCTCCg                                                                                                           >  1:233162/1‑150 (MQ=255)                                           cACGCTTCCCGCCGCCACGCGCTTGCGTGGGGTACTCCGACGCGGGCGGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGc                                                                                                          <  2:738559/150‑1 (MQ=255)                                           cACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGc                                                                                                          >  2:951761/1‑150 (MQ=255)                                           cACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGc                                                                                                          <  1:1056358/150‑1 (MQ=255)                                           cACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGc                                                                                                          <  1:774686/150‑1 (MQ=255)                                             cGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAg                                                                                                                        <  2:576410/134‑1 (MQ=255)                                             cGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAg                                                                                                                        >  1:576410/1‑134 (MQ=255)                                                tGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCAc                                                                                                     <  1:513623/150‑1 (MQ=255)                                                   ccgccgCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCCTGACGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCa                                                                                                  >  2:186243/1‑150 (MQ=255)                                                   ccgccgCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCATGCAAGCGAACAATCTCCGCTTCACTcc                                                                                                  >  2:135182/1‑149 (MQ=255)                                                    cgccgcCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACTCCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCaa                                                                                                 <  1:869008/150‑1 (MQ=255)                                                                   gCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGc                                                                                  <  2:268954/150‑1 (MQ=255)                                                                                aGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGc                                                                     >  2:61226/1‑150 (MQ=255)                                                                                     aGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCggg                                                                >  1:169873/1‑150 (MQ=255)                                                                                     aGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCggg                                                                <  1:1039422/150‑1 (MQ=255)                                                                                                   gcTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGcgt                                                  >  2:890892/1‑150 (MQ=255)                                                                                                       gtcgACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTa                                              <  1:768485/150‑1 (MQ=255)                                                                                                       gtcgACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTa                                              <  2:477875/150‑1 (MQ=255)                                                                                                              aGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGGAATCGCTTTCACCTTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACAcc                                       <  1:917910/150‑1 (MQ=255)                                                                                                               ggCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTAAAGCCATTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCg                                      <  2:98369/150‑1 (MQ=255)                                                                                                                 cccATGAAGCCGAAACCCAGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCCCTCCAGCCGCTGCGGGCTGGACGCGCAGGCAGCTCGGGGCCGACACTGGCGTGGCACCACACCggg                                    <  2:587861/150‑1 (MQ=255)                                                                                                                  ccATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGa                                   >  2:732342/1‑150 (MQ=255)                                                                                                                   cATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAAcaccgggtttcggcttcatgggcctggtcgacgagcgcctggccagccctcgtctgagtaccccacgcaagcgcgtggcggcgggcagcgtgggtattgccgagcgccagacgg                                  <  2:104741‑M2/150‑115 (MQ=255)                                                                                                                      gAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGAtctc                               <  2:934548/150‑1 (MQ=255)                                                                                                                           cGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTc                          >  1:698849/1‑150 (MQ=255)                                                                                                                            gAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTcg                         <  1:1025342/150‑1 (MQ=255)                                                                                                                            gAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTcg                         <  1:343259/150‑1 (MQ=255)                                                                                                                                cccGGTGCGAAGCCCAGGGCAAAcaccgggtttcggcttcatgggcctggtcgacgagcgcctggccagccctcgtctga                                                                                           <  2:20213‑M2/80‑58 (MQ=255)                                                                                                                                cccGGTGCGAAGCCCAGGGCAAAcaccgggtttcggcttcatgggcctggtcgacgagcgcctggccagccctcgtctga                                                                                           >  1:20213‑M2/1‑23 (MQ=255)                                                                                                                                  cGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGc                                                              <  2:544416/107‑1 (MQ=255)                                                                                                                                  cGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGc                                                              >  1:544416/1‑107 (MQ=255)                                                                                                                                          aGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGc           >  2:1128840/1‑150 (MQ=255)                                                                                                                                            cccAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCt         <  1:503574/150‑1 (MQ=255)                                                                                                                                              cAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACTATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCtgt       <  1:237558/150‑1 (MQ=255)                                                                                                                                              cAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGa                                   >  1:267918/1‑122 (MQ=255)                                                                                                                                              cAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGa                                   <  2:267918/122‑1 (MQ=255)                                                                                                                                                   cAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAg  <  2:169873/150‑1 (MQ=255)                                                                                                                                                      acacCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCg                                                                                                           <  1:347923/42‑1 (MQ=255)                                                                                                                                                      acacCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCg                                                                                                           >  2:347923/1‑42 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCACAGGCAGCTCGGGGCCGACACTGGCGTCGTACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAG  >  NC_002947/5196032‑5196327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.