New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5779815 =	31 (0.720)	3 (0.070)	3/244	NT	8.6%	coding (63/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	5779855 =	34 (0.820)					coding (103/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP

CGGCATCAGGTTAGAATCGATTGGCACGCGACCTGCTAGCTGTTGCTGAATGCGCTACCACGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTCAACAATTACCCAACCGCCTACCTGGTGGGC  >  NC_002947/5779711‑5779995                                                                                                                                                 |                                                                                                                                             cGGCATCAGGTTAGAATCGATTGGCACGCGACCTGCTAGCTGTTGCTGAATGCGATACCACCCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGCTGCAAGCACCACCAACAGCCTGTTCCTCATCGCCGCCTTCCTGTTGGGCGCa                                                                                                                                         >  2:302427/1‑150 (MQ=255)  tgccgccaccatcgacaccggcgagcatgccgacggcgaggatgatgaccagaatagggatacccaggcgcgacgacagcgagctgaccaggatacttgcaccCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCaa                                                                                                                                        >  1:43367‑M1/104‑150 (MQ=255)   gCATCAGGTTAGAATCGATTGGCACGCGACCTGCTAGCTGTTGCTGAATGCGCTACCACGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAg                                                                                                                                       >  1:35820/1‑150 (MQ=255)               aaTCGATTGGCACGCGACCTGCTAGCTGTTGCTGAATGCGCTACCACGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAg                                                                                                                           >  2:1016758/1‑150 (MQ=255)                acaccggcgagcatgccgacggcgaggatgatgaccagaatagggatacccaggcgcgacgacagcgagctgaccaggatacttgcaccCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCtggtgg                                                                                                                                              >  2:343348‑M1/90‑130 (MQ=255)                acaccggcgagcatgccgacggcgaggatgatgaccagaatagggatacccaggcgcgacgacagcgagctgaccaggatacttgcaccCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCtggtgg                                                                                                                                              <  1:343348‑M1/41‑1 (MQ=255)                                    cTAGCTGTTGCTGAATGCGCTACCACGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTggg                                                                                                      >  1:110949/1‑150 (MQ=255)                                       gCTGTTGCTGAATGCGCTACCACGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTAt                                                                                                   >  1:948268/1‑150 (MQ=255)                                         tGTTGCTGAATGCGCTACCACGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATcc                                                                                                 <  1:633867/150‑1 (MQ=255)                                                            aCGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCt                                                                              >  2:864673/1‑150 (MQ=255)                                                            aCGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCt                                                                              >  1:431346/1‑150 (MQ=255)                                                             cGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTggtgggt                                                                                                                                            >  2:429940/1‑87 (MQ=255)                                                             cGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTggtgggt                                                                                                                                            <  1:429940/87‑1 (MQ=255)                                                                   ttCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCATCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTTGGGGTCCCTATTCTGGTCATCATCATAGACGTc                                                                       >  2:738218/1‑150 (MQ=255)                                                                    tCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGCTTAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCACCATCCACGCCGTCg                                                                      >  2:964131/1‑150 (MQ=255)                                                                      cccGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGc                                                                    >  1:1019895/1‑150 (MQ=255)                                                                       ccGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCa                                                                   >  2:151979/1‑150 (MQ=255)                                                                       ccGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCa                                                                   >  1:864890/1‑150 (MQ=255)                                                                             tctcGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCg                                                             >  1:768951/1‑150 (MQ=255)                                                                                  gAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGt                                                                                                                              <  2:900456/80‑1 (MQ=255)                                                                                  gAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGt                                                                                                                              >  1:900456/1‑80 (MQ=255)                                                                                  gAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGgt                                                        <  1:151979/150‑1 (MQ=255)                                                                                  gAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGgt                                                        <  2:740126/150‑1 (MQ=255)                                                                                        cTGCCTTTGGGTGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGAt                                                  <  1:1016758/150‑1 (MQ=255)                                                                                        cTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCTAt                                                  <  2:948268/150‑1 (MQ=255)                                                                                        cTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGAt                                                  >  2:706618/1‑150 (MQ=255)                                                                                              ttGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGGCTGGGTATCCCTCTTCTGGCCACCCTCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTggc                                            <  2:617985/150‑1 (MQ=255)                                                                                                 gATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTggcggc                                         >  2:521770/1‑150 (MQ=255)                                                                                                  ttgcacccaccagcaatgcgccgatcaggaacaggctgttgatggtgGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGca                                        >  1:43367‑M2/48‑150 (MQ=255)                                                                                                   tGCAAGCATCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGcat                                       <  1:738218/150‑1 (MQ=255)                                                                                                      aaGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATc                                                                                                                                   >  2:121084/1‑55 (MQ=255)                                                                                                      aaGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATc                                                                                                                                   <  1:121084/55‑1 (MQ=255)                                                                                                      aaGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGcatcat                                    >  1:416373/1‑150 (MQ=255)                                                                                                        ccaccagcaatgcgccgatcaggaacaggctgttgatggtgGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGgtgt                                                      <  1:343348‑M2/89‑1 (MQ=255)                                                                                                        ccaccagcaatgcgccgatcaggaacaggctgttgatggtgGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGgtgt                                                      >  2:343348‑M2/42‑130 (MQ=255)                                                                                                            CATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTCaa                              <  2:940209‑M1/150‑1 (MQ=255)                                                                                                               cAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTcaacaa                           <  1:1002107/150‑1 (MQ=255)                                                                                                                 aCAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTCAACAAtt                         >  1:229874/1‑150 (MQ=255)                                                                                                                     ccTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTCAACAATTAccc                     >  1:189982/1‑150 (MQ=255)                                                                                                                            cTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTCAACAATTACCCAACCGcc              <  2:35820/150‑1 (MQ=255)                                                                                                                            cTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTCAACAATTACCCAACCGcc              <  1:940209/150‑1 (MQ=255)                                                                                                                              gATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGAGGCCGTATCTTCAACAATTACCCAACCGCCTa            >  1:550800/1‑150 (MQ=255)                                                                                                                                     gcATTGCTGGGGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCCCGCCGGTGTCGATGGTGGCGGCATCATCTTCAACAATTACCCAACCGCCTACCtggtg     <  1:302427/150‑1 (MQ=255)                                                                                                                                        ttGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTCAACAATTACCCAACCGCCTACCTGGTGGGc  <  2:864890/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                             CGGCATCAGGTTAGAATCGATTGGCACGCGACCTGCTAGCTGTTGCTGAATGCGCTACCACGCCCCTTCCCCGCTGTCTCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTCCTGATCGGCGCATTGCTGGTGGGTGCAAGTATCCTGGTCAGCTCGCTGTCGTCGCGCCTGGGTATCCCTATTCTGGTCATCATCCTCGCCGTCGGCATGCTCGCCGGTGTCGATGGTGGCGGCATCATCTTCAACAATTACCCAACCGCCTACCTGGTGGGC  >  NC_002947/5779711‑5779995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.