New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5786551 | 32 (0.740) | 4 (0.110) | 4/206 | NT | 13.1% | intergenic (+38/‑93) | PP_5068/trxC | hypothetical protein/thioredoxin |
? | NC_002947 | = 5786588 | 27 (0.770) | intergenic (+75/‑56) | PP_5068/trxC | hypothetical protein/thioredoxin |
AGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCG > NC_002947/5786440‑5786735 | aGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGGTTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATG‑ATGCCGACCGGCTTCGCCGGTGt < 1:607350‑M2/150‑2 (MQ=255) gcgggtgaggccgttgcagtgggggcaggggattaccagtgggtcggtcatttcatctccggtgttgggttcacggtttcctTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCgg > 2:351958‑M1/83‑150 (MQ=255) gcgcttgaggccgttgcagtgggggcagcggattaccagtgggtcggtcatttcatctccggtgttgggttcacggtttcctCGTGGGCGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCgg > 2:324600‑M1/83‑150 (MQ=255) cggttgaggccgttgcagtgggggcaggggattaccagtgggtcggtcatttcatctccggtgttgggttcacggtttcctTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCggg > 1:617269‑M1/82‑150 (MQ=255) tGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgggca < 1:319385‑M2/150‑11 (MQ=255) ttgaggccgttgcagtgggggcaggggattaccagtgggtcggtcatttcatctccggtgttgggttcacggtttcctTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCAc > 2:1079513‑M1/79‑150 (MQ=255) aaGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcggggacgc < 1:1082156‑M2/150‑14 (MQ=255) cTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgggcacgcccgc > 2:1035482‑M2/1‑133 (MQ=255) cGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgggcacgcccgctcc > 1:675949‑M2/1‑130 (MQ=255) gCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgggcacgcccgctccc < 2:167409‑M2/150‑22 (MQ=255) ccGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGCTTGC‑ACCGGCTTCGCCGGTGttcgcgggcacgcccgctccca > 2:67657‑M2/1‑128 (MQ=255) aGCGACCGCCGGAGGGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACaa < 1:445739/150‑1 (MQ=255) gACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGTCGTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGa > 1:789786/1‑150 (MQ=255) cgGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGt > 1:645460/1‑150 (MQ=255) cgGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGt < 2:645460/150‑1 (MQ=255) gAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGa > 2:266417/1‑150 (MQ=255) aaaTCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGTTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGaa < 1:380492/150‑1 (MQ=255) tCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgg < 2:953871‑M2/99‑8 (MQ=255) tCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgg > 1:953871‑M2/1‑92 (MQ=255) cAGCTGCTCTTCCTGATTAGCACCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATga < 2:205732/150‑1 (MQ=255) ctctTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgaccgacc < 2:791546/150‑1 (MQ=255) ttCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAAcc > 1:698871/1‑121 (MQ=255) ttCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAAcc < 2:698871/121‑1 (MQ=255) ttCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCAc > 1:1121600/1‑150 (MQ=255) ttCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGGGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAGCACCGGAGATGAAATGACCGACCCAc > 1:518396/1‑150 (MQ=255) tCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACt > 1:886085/1‑150 (MQ=255) cTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTgg > 1:1000165/1‑150 (MQ=255) gctccGAATGCTGCGGCAGCGGCAGTGCCCGCGCACAAGGCCACGTCATCGAATAC‑AACGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATccc < 2:789786/147‑1 (MQ=25) cGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGc < 1:152584/150‑1 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacgggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctc < 1:603084‑M2/150‑90 (MQ=255) TGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGGTGGATTGC‑ACCGGCTTCGCCGGGGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACt < 1:1119945‑M1/150‑1 (MQ=255) AGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGGTCCCACAAGGAAACCGTGAACCCAACCCCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACg > 2:245159‑M1/1‑150 (MQ=255) GGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGcc < 2:540526‑M1/150‑1 (MQ=255) GGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCCCGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCt > 1:941573‑M1/1‑150 (MQ=255) CGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAacac > 1:746147‑M1/1‑94 (MQ=255) CGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAacac < 2:746147‑M1/94‑1 (MQ=255) GTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAACGTAACGGTTAACGCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCaa < 1:688525‑M1/150‑1 (MQ=255) ccGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggcttgcatcc < 1:914978‑M2/150‑107 (MQ=255) CCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACGAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGc > 2:607350‑M1/1‑150 (MQ=255) aGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCccgcc > 2:1129009/1‑150 (MQ=255) cAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAg > 2:257355/1‑150 (MQ=255) aaCGTGATGGATTGC‑ACCGGCTTCGGCTGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAgc > 1:996319/1‑150 (MQ=255) aCGTGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggcttgcatcccgggctgttcctcg > 2:914978‑M2/1‑30 (MQ=255) cGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAgcgc < 1:1129009/150‑1 (MQ=255) tGATGGATTGC‑ACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacgggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggcttgcatcccgggctgttcctcgaaa > 2:603084‑M2/1‑27 (MQ=255) tGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCt > 2:494327/1‑150 (MQ=255) tGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCt > 1:1033719/1‑150 (MQ=255) gATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTg < 2:1000165/150‑1 (MQ=255) aTTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGa < 2:116291/150‑1 (MQ=255) ttGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGAt > 2:736466/1‑150 (MQ=255) ttGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGAt < 2:886085/150‑1 (MQ=255) c‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATgcg > 1:173708/1‑150 (MQ=255) aCCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATgcgc > 1:642019/1‑150 (MQ=255) ccGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCgg < 1:167409/150‑1 (MQ=255) ggTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTc < 1:257355/150‑1 (MQ=255) gtgtTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCg < 1:266417/150‑1 (MQ=255) | AGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGC‑ACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCG > NC_002947/5786440‑5786735 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |