| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 72 | G→T | 100% | intergenic (–/+75) | – / ← parB | –/chromosome‑partitioning protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 72 | 0 | G | T | 100.0% | 119.3 / NA | 36 | intergenic (–/+75) | –/parB | –/chromosome‑partitioning protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (18/18); total (18/18) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCAGAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCTTGCAACTCGTCAAGCGAGTTGTAGCGAATAACCAACTGGCCTTTGCC > NC_002947/1‑218 | cggaaaaaccgcccagcgatggaaaggcaggcggtttggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAccc < 1:1121260‑M1/93‑1 (MQ=255) accgcccagcgatggaaaggcaggcggtttggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATACTTGATGTCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCa < 1:67200‑M1/100‑1 (MQ=255) ccgcccagcgatggaaaggcaggcggtttggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCaa > 1:164232‑M1/50‑150 (MQ=255) ccgcccagcgatggaaaggcaggcggtttggcgtgcgtatttccatcacAAACGGCCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCaa < 1:631205‑M1/101‑1 (MQ=255) gcgatggaaaggcaggcggtttggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCg > 1:124114‑M1/43‑150 (MQ=255) gcgatggaaaggcaggcggtttggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCg > 2:1078494‑M1/43‑150 (MQ=255) gcggtttggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAc > 1:158317‑M1/28‑118 (MQ=255) gcggtttggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAc < 2:158317‑M1/91‑1 (MQ=255) tttggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCa < 1:930251‑M1/127‑1 (MQ=255) ggcgtgcgtatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGc > 1:683954‑M1/21‑150 (MQ=255) tatttccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAg < 1:176592‑M1/138‑1 (MQ=255) tccatcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAAt < 1:141810‑M1/142‑1 (MQ=255) atcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAc > 1:1046788‑M1/6‑96 (MQ=255) atcacAACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAc < 2:1046788‑M1/91‑1 (MQ=255) aCTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCATCTTCCAAAACTCGTTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGc > 2:30073/1‑150 (MQ=255) tcctcGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAccc > 2:876402/1‑87 (MQ=255) tcctcGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAccc < 1:876402/87‑1 (MQ=255) ctcGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATGGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGAtgtg > 1:103446/1‑150 (MQ=255) gACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAc > 2:910200/1‑73 (MQ=255) gACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAAc < 1:910200/73‑1 (MQ=255) gACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCaa > 1:593379/1‑83 (MQ=255) gACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGAGCGCATAGTATAGGGGTGGATTAACCCCTATTCaa < 2:593379/83‑1 (MQ=255) caacaaGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACACCAGGAATTTTTTCAGCGGATGTGAGCGAGCACGCCt < 2:12428/150‑1 (MQ=255) caacaaGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCt < 2:1121260/150‑1 (MQ=255) acaaGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCTTg > 2:248084/1‑150 (MQ=255) cTATGACTTGGCATAATTTGTGCCGACAAAATGGGCGCATAGGATAGGGGTGTAGTAACCCCTATTCAACACTTCGGCAGTGAAAGCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCTTTTCAACTCGTc > 1:922313/1‑150 (MQ=255) cTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCTTGCAACTCGTc < 1:54511/150‑1 (MQ=255) tGACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCTTGCAACTCgcttga > 1:23113/1‑145 (MQ=255) gACTTGGCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCTTGCAACTCGTCAAGc < 2:930251/150‑1 (MQ=255) gCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCAc > 1:371202/1‑86 (MQ=255) gCATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCAc < 2:371202/86‑1 (MQ=255) cATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAg > 2:13131/1‑107 (MQ=255) cATAATTTGTGCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAg < 1:13131/107‑1 (MQ=255) gCCGACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCTTGCAACTCGTCAAGCGAGTTGTAGCGAATAAc > 1:405183/1‑150 (MQ=255) gACAAAATGCGCGCATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGATCTAGCACGCCTTGCAACTCGTCAAGCGAGTTGTAGCGAATAACCaa < 2:709874/150‑1 (MQ=255) gcATAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCTTGCAACTCGTCAAGCGAGTTGTAGCGAATAACCAACTGGCCTTTGcc > 2:283954/1‑150 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTGCTCCTCGGAAGTCGACCAACAAGTCAGCTATGACTTGGCATAATTTGTGCCGACAAAATGCGCGCAGAGTATAGGGGTGGATTAACCCCTATTCAACTCTTCGGTAGTGATTTCCGACTTCACGCTACAACAGGAATTGTTTCAGCGGATGTGAGCGAGCACGCCTTGCAACTCGTCAAGCGAGTTGTAGCGAATAACCAACTGGCCTTTGCC > NC_002947/1‑218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |