| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 68,342 | A→T | 10.4% | intergenic (+30/+145) | PP_0057 → / ← PP_0058 | major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 68,342 | 0 | A | T | 10.4% | 130.1 / 4.3 | 47 | intergenic (+30/+145) | PP_0057/PP_0058 | major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (21/21); new base T (2/3); total (23/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TATACCGGGGATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTATCCACA > NC_002947/68196‑68481 | tataCCGGGGATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTaaaa > 2:686036/1‑150 (MQ=255)tataCCGGGGATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTaaaa < 2:589210/150‑1 (MQ=255) taCCGGGGATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGc > 1:31189/1‑150 (MQ=255) gggATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTTTTACAGCCGGtt < 1:943844/150‑1 (MQ=255) gtgGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTACATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCaaaaaaa < 1:624240/150‑1 (MQ=255) gTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACtt > 2:411270/1‑150 (MQ=255) ccGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGaa > 2:919598/1‑150 (MQ=255) tCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAAtt > 1:13504/1‑150 (MQ=255) cAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTc < 2:622965/150‑1 (MQ=255) cAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCAACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTc < 1:255023/150‑1 (MQ=255) aGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCa < 1:411270/150‑1 (MQ=255) gATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAAc > 2:292428/1‑150 (MQ=255) cttctGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAg < 1:938677/150‑1 (MQ=255) ttctGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGc > 2:100647/1‑150 (MQ=255) tctgAGAGAAACCAAGGATGTAGGTATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTTTTACAGCCGGTTTTTTTAt > 2:554970/1‑87 (MQ=25) tctgAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTTTTACAGCCGGTTTTTTTAt < 1:554970/87‑1 (MQ=37) tgAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACAGTTGTCAGAAAAAAATCATACAAAGAAATAACTAGCAAATTCa > 1:236740/1‑150 (MQ=255) gaaagaAACCAAGGATATAGATATCGACATAGTCTGATGTCCACATGACATAAAAAAAC‑CGGCTGTAAAAGTCGGTTTTTTTATGCTTCGAAATAACTTATGCACGTTTTTCAGAAAAAATTCATACAAAGAAATATCTGGCAAATTCAt < 2:318248/147‑1 (MQ=255) agaAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATAc < 2:894798/124‑1 (MQ=255) agaAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATAc > 1:894798/1‑124 (MQ=255) acAAGGATGTAAACATAGACAAAATCTGATGATCACATGAAACAAAATAAC‑CGGGTGAAAATACCGTTGTTTTTATGCCTCAAAAAAACTAATGCACGATTTTCAGAAATAATTCATACAAAGTAATAACTAGCAAATTCATACACTTAg < 2:678679/149‑1 (MQ=255) cAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAACC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGa < 1:65183/150‑1 (MQ=255) aaGGATGTAGATATCGACAAAGTCTGATGTCCACATGAAATACACACACATATTTGTAAAA‑CCGGTTATCAAATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAAATAGCAAATTCATACACTTAGat > 1:301002/1‑150 (MQ=255) gTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAAt > 2:747183/1‑150 (MQ=255) aGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACtt < 1:790935/138‑1 (MQ=255) aGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACtt > 2:790935/1‑138 (MQ=255) atatCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCaa < 2:13504/150‑1 (MQ=255) atatCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCACACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCaa > 1:237585/1‑150 (MQ=255) atCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGc > 2:30802/1‑150 (MQ=255) tCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTGTCAGAAAAAATTCATACAAAGAAATACCTAGCAAATTCATACACTTAGATATTAATTGAAGCa > 2:56430/1‑150 (MQ=255) gACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCa > 1:666775/1‑124 (MQ=255) gACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCa < 2:666775/124‑1 (MQ=255) gACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCAtt > 1:89795/1‑150 (MQ=255) gACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCAtt < 1:30802/150‑1 (MQ=255) gACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATACACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCAtt > 1:17728/1‑150 (MQ=255) aCAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCa > 1:44234/1‑98 (MQ=255) aCAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCa < 2:44234/98‑1 (MQ=255) aaaGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTaa < 1:292428/150‑1 (MQ=255) aaaGTCTGATGGCCACATGACATAATAAAAA‑CGGCTGTAAAAACAGGTTTCATCATGACTCAACAAAACTTATGGACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTaa < 2:125428/150‑1 (MQ=255) tGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTTAGAAAAAATTCATACAAAGAAATAACTCACAAAATCATACACTCAGCTATCCATTCAGGCGGTTCATGCaaa > 1:296239/1‑150 (MQ=255) aTGTCCACATGCAATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCaaaaa < 2:484504/150‑1 (MQ=255) cacaTGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCAAAAAACTGca < 1:919598/150‑1 (MQ=255) tGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTa > 2:435045/1‑55 (MQ=255) tGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTa < 1:435045/55‑1 (MQ=255) gCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACaa < 1:686036/150‑1 (MQ=255) aTAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAGAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGtt > 1:359100/1‑150 (MQ=255) aaaaaC‑CGGCTTTTACAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTc > 2:1026625/1‑95 (MQ=38) aaaaaC‑CGGCTTTTACAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTc < 1:1026625/95‑1 (MQ=38) aaC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTATCcaca < 2:301002/150‑1 (MQ=255) | TATACCGGGGATATCTTCTACGGGCTGTGGTACCCGGTGCTGGTGACCGGGATCAGCCTGGTGGTTGGGATCTTCTGTCTGAGAGAAACCAAGGATGTAGATATCGACAAAGTCTGATGTCCACATGCCATAAAAAAAC‑CGGCTGTAAAAGCCGGTTTTTTTATGCCTCAAAAAAACTTATGCACGATTTTCAGAAAAAATTCATACAAAGAAATAACTAGCAAATTCATACACTTAGATATCAATTCAAGCATTTAATCCAAAAACTGCACACAAGTTATCCACA > NC_002947/68196‑68481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |