Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 166,856 | A→T | 10.7% | A17A (GCT→GCA) | pntAA ← | pyridine nucleotide transhydrogenase subunit alpha |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 166,856 | 0 | A | T | 10.7% | 143.7 / 10.5 | 56 | A17A (GCT→GCA) | pntAA | pyridine nucleotide transhydrogenase subunit alpha |
Reads supporting (aligned to +/- strand): ref base A (25/25); new base T (4/2); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.04e-01 |
CCGTAGGCATCGGCGGCGCTCCCAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAGCGCCAACCCGCCGGATCCCG > NC_002947/166713‑167004 | ccGTAGGCATCGGCGGCGCTCCCAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGAcc > 2:937990/1‑150 (MQ=255) tAGGCATCGGCGGCGCTCCCAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCtt < 1:417750/150‑1 (MQ=255) tAGGCATCGGCGGCGCTCCCAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCtt < 1:423835/150‑1 (MQ=255) gCATCGGCGGCGCTCCCAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGtc > 2:924485/1‑150 (MQ=255) aTCGGCGGCGCTCAGCAATTAAGCACCCACGGCTTCAGAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGtctc > 1:587732/1‑150 (MQ=255) gcggcgCTCCCAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCg < 1:688876/150‑1 (MQ=255) cccAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGt < 2:527629/150‑1 (MQ=255) ccAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCTGCGAc < 2:759003/128‑1 (MQ=255) ccAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGtc > 1:573899/1‑150 (MQ=255) ccAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCACCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCATTGTATCACCGGTCTGCGta > 2:416105/1‑149 (MQ=255) ccAAGGGAAGCACCCACGGCTTCATAAGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCTGCGAc > 1:759003/1‑128 (MQ=255) aaGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGtctc < 1:937990/150‑1 (MQ=255) aaGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGtctc < 2:573899/150‑1 (MQ=255) aaGGGAAGCACCCACGGCTTCATAGGCACTGTACGGAATGGCGGCGTTGAACCCGGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGtctc > 1:139512/1‑150 (MQ=255) ggAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCgag > 1:484666/1‑150 (MQ=255) ggAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCgag > 2:972491/1‑150 (MQ=255) gAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATAAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCgaga < 2:143574/150‑1 (MQ=255) gAAGCACCCACGGCTTCATAGGCACGGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCgaga < 2:802627/150‑1 (MQ=255) aaGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCgaga > 2:774437/1‑149 (MQ=255) aaGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCgaga < 1:774437/149‑1 (MQ=255) gCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCa > 2:844368/1‑129 (MQ=255) gCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCa < 1:844368/129‑1 (MQ=255) cACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGaa > 1:1096011/1‑150 (MQ=255) aCCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAac < 1:924485/150‑1 (MQ=255) aTAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCAc > 2:634470/1‑150 (MQ=255) aGGCACTGGCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGa < 2:139512/150‑1 (MQ=255) tGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTAttt > 1:928263/1‑150 (MQ=255) cGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTcc > 2:241354/1‑150 (MQ=255) ggAATGGCGCCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCt < 2:51351/150‑1 (MQ=255) ggcggcGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGt < 2:1048994/150‑1 (MQ=255) ggcgTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGtctc < 2:927931/108‑1 (MQ=255) ggcgTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGtctc > 1:927931/1‑108 (MQ=255) tGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCtttt < 1:972491/150‑1 (MQ=255) cTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCttt < 1:119237/150‑1 (MQ=255) cTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTATCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACTGTTTGTCttt > 1:465644/1‑150 (MQ=255) cTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGCGAGGAACTCCCGACCTG‑TCAACACTGGCACCGGCATTGGTCTTTTGTCTTTGTAGAAGCCAACACACTTCGGa < 1:300962/150‑1 (MQ=255) cccTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTgcg > 1:741518/1‑150 (MQ=255) tGGCCAATCAGTTTCTTGATGGTTTCGGAGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTg > 2:143654/1‑150 (MQ=255) cAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGggc > 2:440181/1‑150 (MQ=255) aaTCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGggcg > 1:113991/1‑150 (MQ=255) aTCAGTTTCTTGATGGTCTCGGGGGTCGCAGCGACACTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGggcgg > 2:470336/1‑150 (MQ=255) tCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGggcggc < 2:716789/150‑1 (MQ=255) gTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGggc > 2:283287/1‑144 (MQ=255) gTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGggc < 1:283287/144‑1 (MQ=255) ttGATGGTTTCGGGGGTCGAAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGTGGAAC‑TCCAAGGTGCACGGCTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAgc < 1:407980/150‑1 (MQ=255) ttGATGGATTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCGGGGGCGGCTGTGGAgc < 2:569985/150‑1 (MQ=255) gATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACAGGTCTGCGTCGCGAGGGGAAC‑ACCAATGTGAACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAgcgc > 2:157508/1‑150 (MQ=255) ggTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAGCGCCaa < 2:1096011/150‑1 (MQ=255) tttCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCGACACACTTCGGATGGTGCGCTgg < 2:797146/129‑1 (MQ=255) tttCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCGACACACTTCGGATGGTGCGCTgg > 1:797146/1‑129 (MQ=255) tttCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAGCGCCAAcc > 2:150464/1‑150 (MQ=255) acaagggTCGCTGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAg < 1:878522/97‑1 (MQ=255) acaagggTCGCTGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAg > 2:878522/5‑101 (MQ=255) acaagggTCGCTGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAGCGCCAACccg > 2:446810/5‑150 (MQ=255) acaagggTCGCTGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAGCGCCAACccg > 1:161112/5‑150 (MQ=255) cAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAGCGCCAACCCGCCGGATCCcg < 1:634470/150‑1 (MQ=255) | CCGTAGGCATCGGCGGCGCTCCCAAGGGAAGCACCCACGGCTTCATAGGCACTGTCCGGAATGGCGGCGTTGAGCCCTGCCCCCCGTTGAACGGTGACCTGATGGCCCTGGCCAATCAGTTTCTTGATGGTTTCGGGGGTCGCAGCGACCCTTGTCTCACCGGTCTGCGTCTCGAGAGGAAC‑ACCAATGTGCACGACTATTTCTCCTGCGGTGACCTTTTGTCTTTGTAGAAGCCAACACACTTCGGATGGTGCGCTGGGGCGGCTGTGGAGCGCCAACCCGCCGGATCCCG > NC_002947/166713‑167004 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |