Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,491,144 | G→C | 7.0% | S267T (AGT→ACT) | cysNC → | sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,491,144 | 0 | G | C | 7.0% | 174.5 / 4.8 | 58 | S267T (AGT→ACT) | cysNC | sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase |
Reads supporting (aligned to +/- strand): ref base G (21/32); new base C (2/2); total (24/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 |
TGGTACGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATC > NC_002947/1491002‑1491286 | tGGTACGCCGGCCCGACGATGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tg > 2:457377/1‑150 (MQ=255) gTACGCCGGCACGAAACTGATATAATTCCTTGGAACCGTCTAGGTTTCGGCTGACCGCCAC‑TCATTTATCCCGCTTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCA‑CGCCACTGGCgatggt < 1:299797/150‑6 (MQ=255) gCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCCAAAGTTATATCGGGTACTTCCGCGGCTGCGCGGGCACCATCGCCAGTGGCG‑TGGTGcac > 2:29585/1‑150 (MQ=255) gCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCACCAGTGGCG‑TGGTGCACAAAg < 2:1077297/150‑1 (MQ=255) ccGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCCGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGt < 2:299388/150‑1 (MQ=255) gACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGa < 2:185562/150‑1 (MQ=255) tGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACgaga < 1:457377/150‑1 (MQ=255) aTGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGc < 1:86615/126‑1 (MQ=255) aTGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGc > 2:86615/1‑126 (MQ=255) tGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGGCGAGATTg > 1:86363/1‑150 (MQ=255) tCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGtgc > 2:726800/1‑150 (MQ=255) tCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGca > 2:312299/1‑124 (MQ=255) tCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGca < 1:312299/124‑1 (MQ=255) acagTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTAC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCg < 2:371774/147‑1 (MQ=255) aCCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCA‑CGCCACTGGCGAtggtg < 2:767390/117‑1 (MQ=255) aCCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCA‑CGCCACTGGCGAtggtg > 1:767390/1‑117 (MQ=255) ccGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGACCTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCgg < 2:726696/150‑1 (MQ=255) cGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCaa < 2:139350/150‑1 (MQ=255) gTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGagc > 1:339611/1‑150 (MQ=255) gTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGagc < 1:835147/150‑1 (MQ=255) tttCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTCCTCCCGTTCA‑T‑CGTTATGCTTCTCAACCTGAACTTCCGCTGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGagca > 1:861869/1‑150 (MQ=255) ggCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCATCCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCg > 2:571473/1‑150 (MQ=255) ggCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTc > 2:17362/1‑124 (MQ=255) ggCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTc < 1:17362/124‑1 (MQ=255) ccGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCaa > 1:658505/1‑150 (MQ=255) cGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACGATGAACATCGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGACGTCGGGAAAGAGCAGCCG‑GGTCAAg > 1:619288/1‑150 (MQ=255) gCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGt < 2:861869/150‑1 (MQ=255) aaCTTCACCGA‑CCTGCGTTTC‑‑CAGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTcc > 2:719253/1‑150 (MQ=255) ttCCCCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCCCAGCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATc < 1:11286/150‑1 (MQ=255) ttCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATc < 1:669403/150‑1 (MQ=255) aCCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCAAAACAAATCTCTCAGTTCTTCTCTGGCACCATCGCAAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTc < 1:806317/150‑1 (MQ=255) ccGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCa < 2:3664/150‑1 (MQ=255) cGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAG‑AGCCGTGGTCAAGTCCATCGTCACCTACGaa < 1:29585/150‑1 (MQ=255) ccGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGAtt > 1:19536/1‑90 (MQ=255) ccGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGAtt < 2:19536/90‑1 (MQ=255) ccGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGaa > 1:643620/1‑150 (MQ=255) ccGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGaa < 2:643620/150‑1 (MQ=255) cGGTGCAGTACGTCAACCGTCCCAACCGGAACGTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAAc < 2:342595/150‑1 (MQ=255) cGGTGCAGTACGTCAAACGTGCAAACCTGATCTTCTGCGCCTCCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAAc < 2:10153/150‑1 (MQ=255) ggTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGGACt < 1:1002824/150‑1 (MQ=255) ggTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACt < 2:339611/150‑1 (MQ=255) tCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTg > 2:108282/1‑150 (MQ=255) ccGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tggt > 2:788897/1‑54 (MQ=255) ccGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tggt < 1:788897/54‑1 (MQ=255) cAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccaggcca > 2:862608/1‑150 (MQ=255) cTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCaa < 2:821219/98‑1 (MQ=255) cTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCaa > 1:821219/1‑98 (MQ=255) ggccGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGTGCAAGAGCAGCGG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGAcc < 2:152476/148‑1 (MQ=255) gcgGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGa < 2:999624/150‑1 (MQ=255) cTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCAt > 2:723562/1‑150 (MQ=255) ttCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATg < 1:571473/150‑1 (MQ=255) tttgtgCACCA‑CGCCACTGGCGATGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATAGAGGGATACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGa > 1:738991/6‑150 (MQ=255) gcgGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGaa < 1:726800/150‑1 (MQ=255) gcgGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGaa < 1:553570/150‑1 (MQ=255) gCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTc > 2:566904/1‑86 (MQ=255) gCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTc < 1:566904/86‑1 (MQ=255) gaCCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTAAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGAGga < 2:948588/149‑1 (MQ=255) aTCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGGCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATc > 1:1105364/1‑150 (MQ=255) | TGGTACGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGAGGTTTCGGCTGACCGCAACTTCACCGA‑CCTGCGTTTC‑‑CCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCG‑GGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATC > NC_002947/1491002‑1491286 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |