Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,632,135 | C→T | 13.2% | P283S (CCT→TCT) ‡ | lepA → | elongation factor 4 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,632,135 | 0 | C | T | 13.2% | 124.4 / 9.5 | 53 | P283S (CCT→TCT) ‡ | lepA | elongation factor 4 |
Reads supporting (aligned to +/- strand): ref base C (25/21); new base T (2/5); total (27/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.50e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 |
GCACTTGGTCGACAGCGTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGACTCCTCGCTGCAGTACATGCCGGA > NC_002947/1631990‑1632283 | gCACTTGGTCGACAGCGTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGa > 1:615288/1‑150 (MQ=255) aCTTGGTCGACAGCGTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAgg > 2:119724/1‑150 (MQ=255) ggTCGACAGCGTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGTCATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGa < 2:1034158/150‑1 (MQ=255) gTCGACAGCGTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCTCAGGGGTCGAg < 1:312212/150‑1 (MQ=255) gTCGACAGCGTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCTCAGGGGTCCAg < 2:885261/150‑1 (MQ=255) tCGACAGCGTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAgg > 1:1078394/1‑150 (MQ=255) tCGACAGCGGCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCGGCATCAAGGACCTCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGCgg > 2:503980/1‑150 (MQ=255) tCGACAGCATCGGTGTCTTCACCCCGAAGCACACCTAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCTCAGGGGTCGAgg < 1:190540/150‑1 (MQ=255) gTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCa < 2:1078394/150‑1 (MQ=255) gtgtCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCt > 2:312090/1‑150 (MQ=255) ttCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCaag > 1:791053/1‑150 (MQ=255) ttCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCaag > 2:530949/1‑150 (MQ=255) ttCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCaag > 2:52179/1‑150 (MQ=255) tCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGgt < 1:554230/133‑1 (MQ=255) tCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGgt > 2:554230/1‑133 (MQ=255) ccccGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAag‑aaga < 1:531652/150‑1 (MQ=255) cccGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGAccc < 1:453096/116‑1 (MQ=255) cccGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGAccc > 2:453096/1‑116 (MQ=255) cccGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGAt > 2:650634/1‑150 (MQ=255) ccGAAGCACACCCAGCCCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGCCCCCTGAGGTCGAGgtgt < 1:43349/130‑1 (MQ=255) ccGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGgtgt > 2:43349/1‑130 (MQ=255) gCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGcc < 1:312090/150‑1 (MQ=255) cccAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAgg < 1:116869/150‑1 (MQ=255) cccAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAgg > 2:391182/1‑150 (MQ=255) cccAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAgg > 2:80337/1‑150 (MQ=255) gACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACCTCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTa < 2:979868/150‑1 (MQ=255) gATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGc < 2:880546/150‑1 (MQ=255) tCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGAGACCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCt > 1:361068/1‑150 (MQ=255) aaGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGAAATACCCAGTCCCCCGAGGTTTGACACCCTGACGCGGGCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTcc > 1:982130/1‑150 (MQ=255) gCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCa < 1:52179/150‑1 (MQ=255) cGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGTTCAg < 2:1093170/150‑1 (MQ=255) ggCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCcgac < 1:650634/150‑1 (MQ=255) atcatcGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTc < 1:119724/150‑1 (MQ=255) atcatcGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCG‑GGAAAAAGTGGGATTGATGCATTAGCGAACGGCTTGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTc > 1:406921/1‑150 (MQ=255) atcGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAg > 1:1064781/1‑150 (MQ=255) atcGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGACTACGCCGGCCGGTTCCCGGTCAGCTCCGACGACTTCGAg > 2:932178/1‑150 (MQ=255) ccAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAag‑aaga > 1:26424/1‑93 (MQ=255) ccAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAag‑aaga < 2:26424/93‑1 (MQ=255) gCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTcc > 2:100293/1‑150 (MQ=255) aaGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGAc < 2:1064781/150‑1 (MQ=255) ggACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGc > 1:778410/1‑150 (MQ=255) cATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGctct < 1:768012/150‑1 (MQ=255) gTGCCCCGGTTGGTGACACCCTGACCCTTGCGTTGACCCCTGAGGTCGAGGTGTTGCCATGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCTGCCTGTTCCCGGTCAGCTCCGACGACGTCGAGGATTTCCGCGACGCTCTGCAGAAGc < 1:503980/150‑1 (MQ=255) tGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGaa < 2:982130/150‑1 (MQ=255) gACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGAc < 2:536035/150‑1 (MQ=255) accctgaccctgTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTg < 1:838627/126‑1 (MQ=255) accctgaccctgTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTg > 2:838627/1‑126 (MQ=255) accctgaccctgTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGActcc > 2:973222/1‑150 (MQ=255) cctgTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGACTCCTCg > 2:590759/1‑145 (MQ=255) cctgTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGACTCCTCg < 1:590759/145‑1 (MQ=255) aacaccTCGACCTCAGGGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGACTCCTCGCTGCAg < 1:804224/146‑1 (MQ=255) acaccTCGACCTCAGGGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCg > 1:376345/4‑77 (MQ=37) acaccTCGACCTCAGGGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCg < 2:376345/74‑1 (MQ=37) accTCGACCTCAGGGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGACTCCTCGCTGCAGTAc > 1:357288/2‑150 (MQ=255) tCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGACTCCTCGCTGCAGTACATg > 2:940636/1‑150 (MQ=255) cccTGCGGACGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGACTCCTCGCTGCAGTACATGCCGGa > 2:347220/1‑150 (MQ=255) ccTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGAc > 1:815679/1‑126 (MQ=255) ccTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGAc < 2:815679/126‑1 (MQ=255) | GCACTTGGTCGACAGCGTCGGTGTCTTCACCCCGAAGCACACCCAGACCGCTGATCTGAAAGCCGGCGAAGTAGGCTTCATCATCGCCAGCATCAAGGACATCCACGGTGCCCCGGTTGGTGACACCCTGACCCTGTCCTCGACCCCTGAGGTCGAGGTGTTGCCAGGCTTCAAG‑AAGATTCAGCCGCAGGTCTACGCCGGCCTGTTCCCGGTCAGCTCCGACGACTTCGAGGATTTCCGCGACGCTCTGCAGAAGCTGACCCTGAACGACTCCTCGCTGCAGTACATGCCGGA > NC_002947/1631990‑1632283 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |