Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,899,850 | A→T | 10.9% | K120M (AAG→ATG) ‡ | PP_1703 → | assimilatory nitrate reductase/sulfite reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,899,850 | 0 | A | T | 10.9% | 129.1 / 7.7 | 46 | K120M (AAG→ATG) ‡ | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
Reads supporting (aligned to +/- strand): ref base A (20/21); new base T (2/3); total (22/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.26e-01 |
CAGCCGCCAGTGCGCACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGAGCACGCCGACGTATTTCTG > NC_002947/1899705‑1899998 | cagccGCCAGTGCGCACCAGCATGGACCAGGCCATCGCTGCAACCGCCGAGCGTCTGCGCGCCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGGGTCCCAGTCCCTGTCCCACAAGTTg > 2:255676/1‑150 (MQ=255) ccgccAGTGCGCACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGcc > 2:648477/1‑150 (MQ=255) cgccAGTGCGCACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACTTGTTGGCCa < 2:466322/150‑1 (MQ=255) gTGCGCACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGc < 1:648477/150‑1 (MQ=255) gcgcACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACTTGTTGGCCaggtactg < 1:116610/150‑8 (MQ=255) cgcACCAGCATGGACCAGGCCATAGCCGCGACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCttt > 1:150946/1‑150 (MQ=255) gCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTa < 1:94821/150‑1 (MQ=255) cATGGACCAGGCCATCGCTGCCACAGCCGAGCGTCATCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTAc > 1:88876/1‑150 (MQ=255) aTGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTAcg > 2:1090408/1‑150 (MQ=255) aCCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATAATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAg < 2:283018/122‑1 (MQ=255) aCCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATAATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAg > 1:283018/1‑122 (MQ=255) cAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCcac < 1:788044/150‑1 (MQ=255) gCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATc < 1:223198/150‑1 (MQ=255) aTCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAg > 2:855402/1‑150 (MQ=255) aTCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAg > 1:733064/1‑150 (MQ=255) tCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGt < 1:823106/150‑1 (MQ=255) gccgAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCgcgc < 1:450859/150‑1 (MQ=255) gccgAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCgcgc > 1:766502/1‑150 (MQ=255) aGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCtgt < 2:94918/150‑1 (MQ=255) cGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGTCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGc < 2:968125/150‑1 (MQ=255) tGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATgg > 2:473508/1‑150 (MQ=255) ggCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGgcca‑gc < 1:855402/150‑1 (MQ=255) atcatcGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGgcca‑gcgcc > 2:929339/1‑150 (MQ=255) atcGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGgcca‑gcgccagc > 1:186661/1‑150 (MQ=255) gACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTc > 2:329065/1‑116 (MQ=255) gACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTc < 1:329065/116‑1 (MQ=255) aTGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGc < 1:1090408/150‑1 (MQ=255) cTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGAt < 1:375343/150‑1 (MQ=255) gTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGCCCATCTCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGCTgg < 1:900115/150‑1 (MQ=255) cGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATgg > 2:53919/1‑147 (MQ=255) cGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATgg < 1:53919/147‑1 (MQ=255) gtCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGgcgc < 1:628194/138‑1 (MQ=255) gtCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGgcgc > 2:628194/1‑138 (MQ=255) tCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCt < 2:766502/150‑1 (MQ=255) ccGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTg < 1:929339/150‑1 (MQ=255) gggCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGACCAAATCGCGACTGTGCATGGCCA‑GCGGCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGc > 2:124272/1‑150 (MQ=255) gCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAg > 1:937037/1‑150 (MQ=255) aTGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTAc < 2:1077993/150‑1 (MQ=255) cTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGAc > 2:685672/1‑150 (MQ=255) tGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACt > 1:716473/1‑150 (MQ=255) ggCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGa < 1:685672/150‑1 (MQ=255) cAGTACCTGGCCAACAAGTTGGCCAATGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGAGCAc > 2:372842/1‑150 (MQ=255) aGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGAGCACg < 2:937037/150‑1 (MQ=255) ccttGGCCAACTTGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATg > 2:110119/4‑71 (MQ=38) ccttGGCCAACTTGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATg < 1:110119/68‑1 (MQ=38) cttGGCCAACTTGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACCCGATGTCAGCCGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGAGCACGCCGa > 2:870262/3‑150 (MQ=255) caacaaGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGAGCACGCCGACGTAtt > 1:488736/1‑150 (MQ=255) caacaaGTTGGCCAAGGGCTTTATCCGTACGAGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGAGCACGCCGACGTAtt > 1:113159/1‑150 (MQ=255) aaGTTGGACATGGGATTAAACCAAACTCTCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGGCGGCTAC‑GTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGAGCACGCCGACGTATTTCTg < 1:1092978/150‑1 (MQ=255) | CAGCCGCCAGTGCGCACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCA‑GCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATGGCCCACCTGGCAGTTACCAGGACTTCGAGCACGCCGACGTATTTCTG > NC_002947/1899705‑1899998 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |