| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,915,631 | G→A | 13.0% | intergenic (+17/‑272) | fklB‑II → / → PP_1715 | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,915,631 | 0 | G | A | 13.0% | 113.0 / 8.5 | 46 | intergenic (+17/‑272) | fklB‑II/PP_1715 | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (19/21); new base A (3/3); total (22/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-01 | |||||||||||
AAGCCCAAGCCCGCTGATCCCGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGAC > NC_002947/1915482‑1915779 | aagcccaagcccGCTGATCCCGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCgg > 1:511038/1‑150 (MQ=255) cGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAAAATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTggg > 1:451802/1‑150 (MQ=255) cGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGCACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACCTTGGCTGGTTGTCGGAAACTCC‑CC‑ACATTGTTggg < 2:223321/150‑1 (MQ=255) ggCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTgggg > 1:377866/1‑150 (MQ=255) gCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGc < 2:53658/150‑1 (MQ=255) cTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCC‑CCAACAATG‑TGGGGCGtttc < 2:660469/150‑2 (MQ=255) cTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCC‑CCAACAATG‑TGGGGCGtttc > 1:660469/1‑149 (MQ=255) tCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTc > 2:828253/1‑150 (MQ=255) ggTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTGGCAAGGTGCCGAGCCGCAGGCCGACGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGt < 2:186078/150‑1 (MQ=255) ggTGTTGGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGGAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGc > 2:882864/1‑150 (MQ=255) gtgtTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGcc > 2:1015460/1‑150 (MQ=255) tgtNCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCg > 2:698426/1‑150 (MQ=255) ttCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGttt > 1:142029/1‑142 (MQ=255) ttCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGttt < 2:142029/142‑1 (MQ=255) gATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTGTTCGTTTGTGCGGATTgg > 2:1019022/1‑150 (MQ=255) gATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCC‑CCAACAATG‑TGGGGCGtttccgacaa < 1:291391/140‑8 (MQ=38) gATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCC‑CCAACAATG‑TGGGGCGtttccgacaa > 2:291391/1‑133 (MQ=38) aTCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑Cc‑aacaat > 2:887168/1‑116 (MQ=255) aTCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑Cc‑aacaat < 1:887168/121‑6 (MQ=255) aTCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGa < 1:828253/150‑1 (MQ=255) ggAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGaa < 1:99987/150‑1 (MQ=255) gAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAAc < 2:882152/150‑1 (MQ=255) tGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGc > 2:111431/1‑150 (MQ=255) cATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCC‑CCAACAATG‑TGGGGCGtttc > 1:144264/1‑116 (MQ=38) cATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCC‑CCAACAATG‑TGGGGCGtttc < 2:144264/117‑2 (MQ=38) gACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTg > 1:59287/1‑150 (MQ=255) cccGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCGAT‑ACAAT‑TTGGGGCGTTTTCGTTTGGTCTGATTGGACGAACCTGCAACAGCTGATACTGTc > 1:738658/1‑150 (MQ=255) cAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGaa > 2:363826/1‑150 (MQ=255) ttGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACAttgtt > 1:653015/1‑88 (MQ=255) ttGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACAttgtt < 2:653015/88‑1 (MQ=255) gCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACATGCAACAGCTGATACTGTCCGAGGAAATGCa > 2:671144/1‑150 (MQ=255) gaaGGTGCTGAGCCGCAGTCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTGGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAg < 2:451802/149‑1 (MQ=255) cAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGCAAATGCAg > 2:610069/1‑150 (MQ=255) gCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTgaa < 2:2001/150‑1 (MQ=255) gCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTgaa < 2:377866/150‑1 (MQ=255) gAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTgaagaa > 2:775083/1‑150 (MQ=255) cAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGa < 1:363826/150‑1 (MQ=255) aGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGAt < 1:698426/150‑1 (MQ=255) gCCACTGAAGAAGTACCTGACAAGTAACAGTGACTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTAGACGAATCTGCAAGAGCTGAGTCTTTCCGATGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGa < 2:511038/150‑1 (MQ=255) aaGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAg < 1:1015460/150‑1 (MQ=255) tAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTa > 1:206428/1‑150 (MQ=255) cATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTc < 1:111431/150‑1 (MQ=255) cATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTc < 2:206428/150‑1 (MQ=255) cATTGGCTGGTTGTCGGAAACGCC‑CA‑ACGTTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTc < 1:1019022/150‑1 (MQ=255) gTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTACCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAgg < 1:895405/136‑1 (MQ=255) gTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTACCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAgg > 2:895405/1‑136 (MQ=255) cGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGa < 1:1105869/150‑1 (MQ=255) ggAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGAc > 1:662905/1‑150 (MQ=255) | AAGCCCAAGCCCGCTGATCCCGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCC‑CC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGAC > NC_002947/1915482‑1915779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |