| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,080,393 | G→C | 10.4% | A340A (GCG→GCC) | earP → | EF‑P arginine 32 rhamnosyl‑transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,080,393 | 0 | G | C | 10.4% | 138.7 / 6.7 | 48 | A340A (GCG→GCC) | earP | EF‑P arginine 32 rhamnosyl‑transferase |
| Reads supporting (aligned to +/- strand): ref base G (18/25); new base C (2/3); total (20/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01 | |||||||||||
TGTGCAGGACGAGAATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGATTTTTATAAATCCATCCAGA > NC_002947/2080246‑2080540 | tgtgCAGGACGAGAATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGggcggc > 1:266514/1‑150 (MQ=255) aGGACGAGAATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGcc > 1:42680/1‑150 (MQ=255) ggACGAGAATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCa < 2:266514/150‑1 (MQ=255) gACGAGAATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAg > 1:217446/1‑150 (MQ=255) gACGAGAATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAg > 2:1058517/1‑150 (MQ=255) cGAGAATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCa < 1:772388/150‑1 (MQ=255) agaATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCTGGCGGGccgcccgccag < 1:265477/150‑4 (MQ=255) agaATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCAtt < 1:1058517/150‑1 (MQ=255) gaATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTg > 2:590626/1‑150 (MQ=255) aaTGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCATGTGGCGTGCCTGCAACATGGATTTCGTCATGGGCCAATGCTGGCGGGCCGCCCGCCAggcctgg < 2:126820/150‑7 (MQ=255) aTTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAATGCTGGCGGGCCGCCCGCCAggcctgg < 1:439059/143‑7 (MQ=255) aTTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAATGCTGGCGGGCCGCCCGCCAggcctgg > 2:439059/1‑137 (MQ=255) ttGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACt > 2:683760/1‑150 (MQ=255) ggAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCAtt < 2:804620/137‑1 (MQ=255) ggAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTgca < 2:328463/150‑1 (MQ=255) ggAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCGGTCGGGCGGCCCGCCAGCAtt > 1:804620/1‑137 (MQ=255) gAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTgcag < 2:537065/150‑1 (MQ=255) aaaCCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCATCATTGGCCGGAACTgcagca < 1:233315/150‑1 (MQ=255) aGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTgcagcagc < 2:773951/150‑1 (MQ=255) aaGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCCGCCCGCCAg < 1:872823/122‑1 (MQ=255) aaGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCCGCCCGCCAg > 2:872823/1‑122 (MQ=255) ccTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTg < 1:765435/150‑1 (MQ=255) ccTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTg < 2:336946/150‑1 (MQ=255) cTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTgg < 1:1013581/150‑1 (MQ=255) cgcATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCttt < 1:226951/144‑1 (MQ=255) cgcATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCttt > 2:226951/1‑144 (MQ=255) cGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAg < 2:349496/150‑1 (MQ=255) aGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGa > 1:918692/1‑150 (MQ=255) gACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGAc < 1:590626/150‑1 (MQ=255) gatgccgatgcAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCtt < 2:217446/150‑1 (MQ=255) cgatgcAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCcac > 1:147588/1‑150 (MQ=255) gCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACGGCAGCAGCATGCTCGCCTTTGTGGGGCGCCGCAGGCCTCTCAGCCGGACCTTGCCACAGCGCTa > 2:789862/1‑150 (MQ=255) cTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTa < 1:539402/150‑1 (MQ=255) ttGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCtt < 1:171306/132‑1 (MQ=255) ttGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCtt > 2:171306/1‑132 (MQ=255) ttGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTacac < 1:683760/150‑1 (MQ=255) cTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACGTTGCCACAGCGCTAGTACACTTTTAc < 2:42680/150‑1 (MQ=255) tgtgGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTAcc < 2:867702/150‑1 (MQ=255) cTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTaca > 2:987970/1‑132 (MQ=255) cTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTaca < 1:987970/132‑1 (MQ=255) ggAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTAt > 2:482864/1‑150 (MQ=255) tGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCGACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATAcg > 2:79753/1‑150 (MQ=255) ggCCAGGCCTGGCGCGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGAttttt < 1:500329/150‑1 (MQ=255) ggCCAGGACTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCGTGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGGTAGTACACTTTTACCGAAATTCGCTATGATTCGCGGCCTCGAttttt < 2:571576/150‑1 (MQ=255) ccAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGATTTTtat > 1:895278/1‑150 (MQ=255) cAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGATTTTtata > 2:1063586/1‑150 (MQ=255) gCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGATTTTTATAAat < 2:625590/150‑1 (MQ=255) tGGNGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGATTTTTATAAatcca > 2:699348/1‑150 (MQ=255) tGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGATTTTTATAAatcca > 2:1033026/1‑150 (MQ=255) gcggcCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGATTTTTATAAATCCATCCAGa < 2:918692/150‑1 (MQ=255) | TGTGCAGGACGAGAATGCCCATTGGGAAAAGCTCGAAGCTTTCCTCGCGCATTATCGCTGCGGCCTGTCAGACGATGCCGATGCAGCCCTGTTGGGCCTGTGGCGTGCCTGGAACATGGATTTCGACATGGGCCAGGCCTGGCGGGCGGCCCGCCAGCATTGGCCGGAACTGCAGCAGCATGCTCGCCTTTGGGGGGCGCGACAGGCCGCTCAGCCGGACCTTGCCACAGCGCTAGTACACTTTTACCGAAATTCGCTATGATACGCGGCCTCGATTTTTATAAATCCATCCAGA > NC_002947/2080246‑2080540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |