| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 5.6% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 5.6% | 385.1 / 10.7 | 142 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (72/62); new base T (5/3); total (77/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.46e-01 | |||||||||||
Only 100 of 148 total aligned reads displayed.
GCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT > NC_002947/196910‑197181 | gCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCcaca > 1:1047566/1‑150 (MQ=11) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATAACGTCTACAACAACGGTTCGACCGTCAGCGTCACCACCGAGAACGCCACAgg > 1:195302/1‑150 (MQ=17) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGc > 1:1079460/1‑150 (MQ=32) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 2:1008243/150‑1 (MQ=32) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 1:1003899/150‑1 (MQ=32) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa > 1:225187/1‑150 (MQ=35) gtgaccgtgaccCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAAAACAGCG‑‑GCGATAACCGCCCTGATCCCCGGCGAATGACGGCTACAACAACGGTTCGACCGTCAGCTTCACCATCGAGAACGCCACAGGCGGTAATTTc < 1:810104/150‑1 (MQ=2) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg > 1:1000095/1‑150 (MQ=37) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGAAGTCTCCGGTATAGCTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg > 2:578913/1‑150 (MQ=11) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 1:574697/1‑138 (MQ=33) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 2:152003/145‑1 (MQ=33) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATAGGCAACGCCACAGGCGGTAATTTCGAGCaa < 1:578913/150‑1 (MQ=12) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCGTGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 1:397033/150‑1 (MQ=17) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 2:302772/150‑1 (MQ=32) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGTCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 1:355881/1‑143 (MQ=17) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc > 1:105601/1‑150 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 2:634308/1‑150 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 1:142582/1‑134 (MQ=33) cGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 1:614014/150‑1 (MQ=35) gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 1:992922/148‑1 (MQ=35) cAAACCATTACCGTTGAAGCCGGCAAGCCCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc < 2:489186/150‑1 (MQ=37) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACAAGGGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc > 1:243127/1‑150 (MQ=255) cAAACCATTACCGTTGAAGCCGGCAAGACCCACGCGACGGTCTA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc < 2:533026/150‑1 (MQ=11) cAAACAATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGAAGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCGTAATACGAcg > 2:516404/1‑149 (MQ=11) aaactgttACCGTTGAAGCCGGCAAGTCCCAGGGCGGGGTCGA‑TTTCAAGA‑CCCCGGCGACGGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAccc < 2:497567/144‑1 (MQ=11) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 1:855244/116‑1 (MQ=33) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg > 2:855244/1‑116 (MQ=32) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcccc > 2:1019573/1‑150 (MQ=38) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 2:1082272/127‑1 (MQ=33) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa > 1:301677/1‑141 (MQ=35) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa < 2:301677/141‑1 (MQ=35) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTc < 2:1012683/150‑1 (MQ=38) tACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 2:195302/150‑1 (MQ=38) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa > 2:572932/1‑150 (MQ=39) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTACCTGCGAGAAACTGACCCCGAATCCGACCCCGGCTCAGAc > 1:608394/1‑150 (MQ=255) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa < 1:280618/147‑1 (MQ=38) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa > 2:280618/1‑147 (MQ=38) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa < 1:634308/150‑1 (MQ=38) ttGAAGCCGACAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa > 2:218724/1‑150 (MQ=38) aaGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:1539/112‑1 (MQ=33) aaGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGACCACGa < 2:652047/150‑1 (MQ=38) gCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATc > 2:27399/1‑150 (MQ=38) ggCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 1:338370/150‑1 (MQ=39) ggCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 2:338370/1‑150 (MQ=39) gCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACAACCCCGAACGCCACAGGCGGTACTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACg > 2:584371/1‑150 (MQ=14) cAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 1:842910/1‑148 (MQ=38) aCCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCCCGATCAACGACTCg > 2:77008/1‑150 (MQ=25) cccAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 1:405016/1‑150 (MQ=35) ccAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGTTCAGACCACGATCAACGACTCGGt > 1:784980/1‑150 (MQ=25) ccAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 1:591841/1‑150 (MQ=35) ccAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 2:447124/150‑1 (MQ=34) ggCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 2:475723/150‑1 (MQ=37) cAGCGTCGA‑CTTCCAGA‑CCCCGGCGAATGACGTCTACAACAGCGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc > 2:962550/1‑150 (MQ=255) aGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcc < 1:714323/150‑1 (MQ=39) cGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 1:106717/88‑1 (MQ=35) cGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 2:106717/1‑88 (MQ=35) cGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt > 2:1003378/1‑106 (MQ=35) cGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt < 1:1003378/106‑1 (MQ=35) cGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCACCGAGAACGCCACACGCGGTAATTTCGCGGACCCGACCCCGAATCCGACCCCGGCCCAGACCACGCCCACCGACACCGTCGCTGccac > 2:150856/1‑150 (MQ=11) cGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCATCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc < 1:279925/107‑1 (MQ=25) cGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCATCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc > 2:279925/1‑107 (MQ=25) gTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc > 1:761545/1‑146 (MQ=37) tCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacca > 2:114103/1‑150 (MQ=40) tgtCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAGTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc < 2:171943/148‑1 (MQ=255) tCCAGA‑CCCCGGCGAATGACGTCTACAGCAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATACGACCCCGGCTCAGACCACGATCAACGACTCGGTCAACGCTACCTCcgcta < 2:591841/150‑3 (MQ=11) tCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGa < 2:405016/150‑1 (MQ=255) cAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc > 1:384781/1‑150 (MQ=40) aGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc < 2:1000095/150‑1 (MQ=255) aGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc > 1:1105457/1‑150 (MQ=255) ccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa < 1:501853/82‑1 (MQ=35) ccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg > 1:1126325/1‑150 (MQ=255) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 2:661992/71‑1 (MQ=35) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 1:661992/1‑71 (MQ=35) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 1:656146/1‑73 (MQ=35) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCACCTGACCCCGAATCCGACCCCGGCTCAGACCACGCTCAACGACTCCGCCGACGCCACCACCGCGACCCTCACgg > 2:520268/1‑150 (MQ=11) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc < 2:799048/95‑1 (MQ=34) aaTGACGTCTACAACAAAGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc < 1:144843/150‑1 (MQ=255) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCGCCACCGCGACCCTGACGGCGAGCCCGt > 2:589903/1‑150 (MQ=255) cGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTc < 1:585070/150‑1 (MQ=255) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc < 1:961367/137‑1 (MQ=40) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc > 2:961367/1‑137 (MQ=40) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 1:34655/1‑150 (MQ=38) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGacac < 1:717481/116‑4 (MQ=11) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGacac > 2:717481/1‑113 (MQ=11) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg < 1:449146/138‑1 (MQ=40) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg > 2:449146/1‑138 (MQ=39) aacaacGGTTCGACTGTCAGCGTCACCATCGAGAAAGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 1:88759/1‑150 (MQ=255) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 2:1039439/1‑107 (MQ=33) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 1:418785/150‑1 (MQ=39) caacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc > 1:374706/1‑111 (MQ=12) caacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc < 2:374706/111‑1 (MQ=12) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg > 1:486296/1‑44 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 2:661740/1‑141 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 1:661740/141‑1 (MQ=39) gTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 1:967167/1‑150 (MQ=255) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 2:324574/150‑1 (MQ=38) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 2:753402/1‑150 (MQ=38) ccGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCt < 2:119915/115‑1 (MQ=40) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc < 1:311557/120‑1 (MQ=39) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 2:916151/1‑150 (MQ=255) | GCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGA‑TTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT > NC_002947/196910‑197181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |