Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,515,922 C→T 7.5% A217T (GCC→ACC)  phnW ← 2‑aminoethylphosphonate‑‑pyruvate transaminase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,515,9220CT 7.5% 148.4 / 2.0 53A217T (GCC→ACC) phnW2‑aminoethylphosphonate‑‑pyruvate transaminase
Reads supporting (aligned to +/- strand):  ref base C (29/20);  new base T (2/2);  total (31/22)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01

CGGGCCGGAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTCATG  >  NC_002947/2515777‑2516070
                                                                                                                                                  |                                                                                                                                                    
cGGGCCGGAAGGCCACCTTCCTCGTTGTATTCCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTg                                                                                                                                                  <  1:281295/150‑1 (MQ=255)
 gggCCGGAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGGGTGGGCATTGc                                                                                                                                                 >  1:1100947/1‑150 (MQ=255)
   gCCGGAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCt                                                                                                                                               >  1:833083/1‑150 (MQ=255)
      ggAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGTATTGCCTTcg                                                                                                                                            >  2:420553/1‑150 (MQ=255)
      ggAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGTATTGCCTTcg                                                                                                                                            >  2:420637/1‑150 (MQ=255)
      ggAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTcg                                                                                                                                            >  2:929641/1‑150 (MQ=255)
            ccACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGgcc                                                                                                                                      >  2:1052370/1‑150 (MQ=255)
                 ttCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAg                                                                                                                                 >  1:755570/1‑150 (MQ=255)
                  tCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAgg                                                                                                                                <  2:487729/150‑1 (MQ=255)
                        ttGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCtt                                                                                                                          >  2:576611/1‑150 (MQ=255)
                               gctgcAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCgg                                                                                                                   <  2:951026/150‑1 (MQ=255)
                                ctgcAGTGCTTCGTGAAGGGACGCGCCACAGTGAGTAGGCGGAATGAAGAGCAATTGCCCGGTCTTGGCCATGAAGGCGTCGTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGc                                                                                                                  <  2:789665/150‑1 (MQ=255)
                                     gTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGa                                                                                                             <  2:755570/150‑1 (MQ=255)
                                        cTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGa                                                                                                          >  1:424118/1‑150 (MQ=255)
                                        cTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGa                                                                                                          >  1:424596/1‑150 (MQ=255)
                                                 gggCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGc                                                                                                 <  1:889373/150‑1 (MQ=255)
                                                    ccGCGACCACGTGGGTAGGCGGGCTGCAACGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCgg                                                                                              <  1:840800/150‑1 (MQ=255)
                                                       cgACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTa                                                                                           >  2:338693/1‑150 (MQ=255)
                                                        gACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTat                                                                                          <  2:79509/150‑2 (MQ=255)
                                                          ccACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGc                                                                                        >  1:1039447/1‑150 (MQ=255)
                                                          ccACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGc                                                                                        >  1:1039121/1‑150 (MQ=255)
                                                               gTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTc                                                                                    <  1:1052370/150‑1 (MQ=255)
                                                                      ggCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCAc                                                                             >  1:288769/1‑150 (MQ=255)
                                                                          gggTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGTATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTc                                                                         <  1:420637/150‑1 (MQ=255)
                                                                          gggTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGTATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTc                                                                         <  1:420553/150‑1 (MQ=255)
                                                                          gggTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGGGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTc                                                                         >  2:350420/1‑150 (MQ=255)
                                                                           ggTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTcc                                                                        <  2:833083/150‑1 (MQ=255)
                                                                                    ccATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGCGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTGTTTTGGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCcgc                                                               >  1:699491/1‑150 (MQ=255)
                                                                                           ccGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGt                                                        >  2:110356/1‑150 (MQ=255)
                                                                                            agatCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTg                                                       >  1:927818/4‑150 (MQ=255)
                                                                                             ggTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGACTTCGGCGGCCGCGAGGGCGCATTTTTCGGCGAAGACGAAGCACATGCCGGGTACGCCTTCCAGGCCCTTTCCGGCGGCCGCGATCAGGGc                                                      >  2:51596/1‑150 (MQ=255)
                                                                                               tCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGCAGTTCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCtt                                                    <  1:576611/150‑1 (MQ=255)
                                                                                                 ttGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTATTCAGCACGACGGAGAAGCCCATGCCGGGTACGCCTTCCCGGCACTTTCCGGAGGCCGCGATCAGTGCTTCg                                                  >  1:20339/1‑150 (MQ=255)
                                                                                                      cATTTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTAGGCGGCCTCCAGGGCGCTTTTTTCGGCGCAGACGAAGCCCATGCCGGGTACGCCTTCCACGCACTTTCCGCAGGCCGCACTCAATGCTTCGAAggg                                             >  2:222390/1‑150 (MQ=255)
                                                                                                       aTGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgggg                                            >  1:608901/1‑150 (MQ=255)
                                                                                                       aTGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgggg                                            <  1:338693/150‑1 (MQ=255)
                                                                                                         ttAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGAt                                          <  2:793115/149‑1 (MQ=255)
                                                                                                          tAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGAtt                                         >  2:207585/1‑150 (MQ=255)
                                                                                                               gTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGTCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTcgcg                                    >  1:65133/1‑150 (MQ=255)
                                                                                                                         tGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCatcgatc                          >  2:389013/1‑150 (MQ=255)
                                                                                                                          gCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgg                                              >  1:857600/1‑129 (MQ=255)
                                                                                                                          gCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgg                                              <  2:857600/129‑1 (MQ=255)
                                                                                                                             ggTCCATGGCCAGCGAGAGGGCATTGCCTTCGGCGGCCGCCAGGGAGCTTTTTTCGGCGAAAACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGACGGGGCTTTCGCGGGCATCAATCGGCa                      >  2:468343/1‑150 (MQ=255)
                                                                                                                                  aTGGCCAGCGAGTGGGCATTGCCTTAGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgg                                              >  1:241039/1‑121 (MQ=255)
                                                                                                                                  aTGGCCAGCGAGTGGGCATTGCCTTAGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgg                                              <  2:241039/121‑1 (MQ=255)
                                                                                                                                          cGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGa         <  1:596596/150‑1 (MQ=255)
                                                                                                                                           gAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAg        >  2:671311/1‑150 (MQ=255)
                                                                                                                                              tGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCa                                                                                                    <  2:769953/55‑1 (MQ=255)
                                                                                                                                              tGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCa                                                                                                    >  1:769953/1‑55 (MQ=255)
                                                                                                                                              tGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTc     <  1:929641/150‑1 (MQ=255)
                                                                                                                                              tGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTc     >  1:299174/1‑150 (MQ=255)
                                                                                                                                                 gCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTCATg  <  2:878351/150‑1 (MQ=255)
                                                                                                                                                 gCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTCATg  <  1:86815/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CGGGCCGGAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCACGTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTCATG  >  NC_002947/2515777‑2516070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: