Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,515,922 | C→T | 7.5% | A217T (GCC→ACC) | phnW ← | 2‑aminoethylphosphonate‑‑pyruvate transaminase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,515,922 | 0 | C | T | 7.5% | 148.4 / 2.0 | 53 | A217T (GCC→ACC) | phnW | 2‑aminoethylphosphonate‑‑pyruvate transaminase |
Reads supporting (aligned to +/- strand): ref base C (29/20); new base T (2/2); total (31/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 |
CGGGCCGGAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTCATG > NC_002947/2515777‑2516070 | cGGGCCGGAAGGCCACCTTCCTCGTTGTATTCCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTg < 1:281295/150‑1 (MQ=255) gggCCGGAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGGGTGGGCATTGc > 1:1100947/1‑150 (MQ=255) gCCGGAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCt > 1:833083/1‑150 (MQ=255) ggAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGTATTGCCTTcg > 2:420553/1‑150 (MQ=255) ggAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGTATTGCCTTcg > 2:420637/1‑150 (MQ=255) ggAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTcg > 2:929641/1‑150 (MQ=255) ccACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGgcc > 2:1052370/1‑150 (MQ=255) ttCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAg > 1:755570/1‑150 (MQ=255) tCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAgg < 2:487729/150‑1 (MQ=255) ttGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCtt > 2:576611/1‑150 (MQ=255) gctgcAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCgg < 2:951026/150‑1 (MQ=255) ctgcAGTGCTTCGTGAAGGGACGCG‑CCACAGTGAGTAGGCGGAATGAAGAGCAATTGCCCGGTCTTGGCCATGAAGGCGTCGTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGc < 2:789665/150‑1 (MQ=255) gTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGa < 2:755570/150‑1 (MQ=255) cTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGa > 1:424118/1‑150 (MQ=255) cTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGa > 1:424596/1‑150 (MQ=255) gggCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGc < 1:889373/150‑1 (MQ=255) ccGCGACCAC‑GTGGGTAGGCGGGCTGCAACGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCgg < 1:840800/150‑1 (MQ=255) cgACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTa > 2:338693/1‑150 (MQ=255) gACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTat < 2:79509/150‑2 (MQ=255) ccAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGc > 1:1039447/1‑150 (MQ=255) ccAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGc > 1:1039121/1‑150 (MQ=255) gTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTc < 1:1052370/150‑1 (MQ=255) ggCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCAc > 1:288769/1‑150 (MQ=255) gggTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGTATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTc < 1:420637/150‑1 (MQ=255) gggTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGTATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTc < 1:420553/150‑1 (MQ=255) gggTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGGGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTc > 2:350420/1‑150 (MQ=255) ggTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTcc < 2:833083/150‑1 (MQ=255) ccATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGCGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTGTTTTGGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCcgc > 1:699491/1‑150 (MQ=255) ccGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGt > 2:110356/1‑150 (MQ=255) agatCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTg > 1:927818/4‑150 (MQ=255) ggTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGACTTCGGCGGCCGCGAGGGCGCATTTTTCGGCGAAGACGAAGCACATGCCGGGTACGCCTTCCAGGCCCTTTCCGGCGGCCGCGATCAGGGc > 2:51596/1‑150 (MQ=255) tCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGCAGTTCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCtt < 1:576611/150‑1 (MQ=255) ttGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTATTCAGCACGACGGAGAAGCCCATGCCGGGTACGCCTTCCCGGCACTTTCCGGAGGCCGCGATCAGTGCTTCg > 1:20339/1‑150 (MQ=255) cATTTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTAGGCGGCCTCCAGGGCGCTTTTTTCGGCGCAGACGAAGCCCATGCCGGGTACGCCTTCCACGCACTTTCCGCAGGCCGCACTCAATGCTTCGAAggg > 2:222390/1‑150 (MQ=255) aTGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgggg > 1:608901/1‑150 (MQ=255) aTGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgggg < 1:338693/150‑1 (MQ=255) ttAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGAt < 2:793115/149‑1 (MQ=255) tAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGAtt > 2:207585/1‑150 (MQ=255) gTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGTCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTcgcg > 1:65133/1‑150 (MQ=255) tGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCatcgatc > 2:389013/1‑150 (MQ=255) gCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgg > 1:857600/1‑129 (MQ=255) gCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgg < 2:857600/129‑1 (MQ=255) ggTCCATGGCCAGCGAGAGGGCATTGCCTTCGGCGGCCGCCAGGGAGCTTTTTTCGGCGAAAACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGACGGGGCTTTCGCGGGCATCAATCGGCa > 2:468343/1‑150 (MQ=255) aTGGCCAGCGAGTGGGCATTGCCTTAGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgg > 1:241039/1‑121 (MQ=255) aTGGCCAGCGAGTGGGCATTGCCTTAGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAgg < 2:241039/121‑1 (MQ=255) cGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGa < 1:596596/150‑1 (MQ=255) gAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAg > 2:671311/1‑150 (MQ=255) tGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCa < 2:769953/55‑1 (MQ=255) tGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCa > 1:769953/1‑55 (MQ=255) tGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTc < 1:929641/150‑1 (MQ=255) tGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTc > 1:299174/1‑150 (MQ=255) gCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTCATg < 2:878351/150‑1 (MQ=255) gCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTCATg < 1:86815/150‑1 (MQ=255) | CGGGCCGGAAGGCCACCTTCCTCGTTGTATTGCTGCAGTGCTTCGTGCAGGGCCGCGACCAC‑GTGGGTAGGCGGGGTGAAGCGCCATTGCCCGGTCTTGGCCATGTAGGCGTGCTGGTCGTGCAGGTCCATGGCCAGCGAGTGGGCATTGCCTTCGGCGGCCGCCAGGGCGCTTTTTTCGGCGAAGACGAAGCCCATGCCGGGTACGCCTTCCAGGCACTTTCCGGAGGCCGCGATCAGTGCTTCGAAGGGGATTTCGCGGGCATCGATCGGCAATGCTCCGAACGAGCTCATG > NC_002947/2515777‑2516070 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |