| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 200,773 | T→C | 9.1% | A2093A (GCT→GCC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 200,773 | 0 | T | C | 9.1% | 104.6 / 3.2 | 44 | A2093A (GCT→GCC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (21/19); new base C (2/2); total (23/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.29e-01 | |||||||||||
CAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGG > NC_002947/200625‑200922 | cAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTc < 2:846654/150‑1 (MQ=255) gCACACCAGGTAACGAAGGCGATATCGTCAAGGGCACCATCACCGCCGACCAGGCTTCGGTCGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGGCGTGCACCTGAGCAACAACGCTCAgg > 2:71419/1‑150 (MQ=14) tAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCaa < 2:841400/150‑1 (MQ=255) tAACGAAGGCGATATCGTCAAGGCCCCCATCACCGCCGACCAGGCTTCGGTGGCCGAGACCGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCaa < 2:400002/150‑1 (MQ=255) aGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTgg < 1:1047880/150‑1 (MQ=255) aGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTgg < 1:836893/150‑1 (MQ=255) ggCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGCCGCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGc > 1:623020/1‑150 (MQ=255) gTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAgc < 2:484879/150‑1 (MQ=39) ggTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGcc > 1:440497/1‑150 (MQ=39) aTCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACAcc > 1:676043/1‑150 (MQ=39) tCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACAccc > 2:786631/1‑150 (MQ=37) tCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACAccc > 2:272858/1‑150 (MQ=38) aggctgatctggccagcatcgttgtaaacgtcatcgccctgcgcagcgtgggtgtacggcgcgctggtctcgccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCACCa > 1:423871‑M1/85‑115 (MQ=255) aggctgatctggccagcatcgttgtaaacgtcatcgccctgcgcagcgtgggtgtacggcgcgctggtctcgccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCACCa < 2:423871‑M1/31‑1 (MQ=255) cgccgACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCacga < 1:210608/150‑1 (MQ=35) ttCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGa < 1:119257/150‑1 (MQ=35) ttCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGAAGCTCACCGTAAACGCTCAGGTCACCATCAAGGCTGGCCCAACGAGCGCGCGGTAAACACACGACGCGCAAGGCGa > 1:466407/1‑150 (MQ=11) tCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGAt < 1:178034/150‑1 (MQ=35) aaCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCgg < 2:671250/150‑1 (MQ=40) aaCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCgg > 1:1080255/1‑150 (MQ=40) aCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCggg < 1:786631/150‑1 (MQ=40) cagcgtgggtgtacggcgcgctggtttcgccggccttgatgGTGACCCTGAGCAACAACGCCCAGGTCACCa < 2:922772‑M1/31‑1 (MQ=255) cagcgtgggtgtacggcgcgctggtttcgccggccttgatgGTGACCCTGAGCAACAACGCCCAGGTCACCa > 1:922772‑M1/42‑72 (MQ=255) tGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCaa > 1:265275/1‑110 (MQ=35) tGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCaa < 2:265275/110‑1 (MQ=35) aCCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGt < 2:623020/150‑1 (MQ=255) aGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCg > 1:1053948/1‑150 (MQ=255) ccGCTGGCCCACGACCTGGTAGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACACGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCt > 1:563142/1‑150 (MQ=255) tggtttcgccagccttgatgGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCAc > 1:1031125‑M1/21‑142 (MQ=255) tggtttcgccagccttgatgGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCAc < 2:1031125‑M1/122‑1 (MQ=255) ggCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGa < 2:440497/150‑1 (MQ=255) gCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGAt > 1:655858/1‑150 (MQ=255) gtcACGACCAGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGTGCGGGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATg > 1:630709/3‑150 (MQ=14) cACGTCCTGGTCGTGACCCTGAGCAGCGACGCTCAGGTCACCAAGAAGGCTGGCGAGACCAGCGCGCCGTACACCCACAACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATAAGCCTCGGCATCACGTCCGCTGTGGATGTa > 1:443495/1‑150 (MQ=14) aCCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACg < 2:676043/150‑1 (MQ=255) tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTc > 2:751483/1‑150 (MQ=255) CCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCg > 2:655858‑M1/1‑150 (MQ=255) CCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGa > 1:751483‑M1/1‑150 (MQ=255) CCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGa < 1:429717‑M1/150‑1 (MQ=255) caacaaCGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGAGCAGCCTCCGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCt < 2:466407/150‑1 (MQ=255) acaacGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGc > 2:1082452/1‑150 (MQ=255) acGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCgg < 2:1096727/84‑1 (MQ=255) acGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCgg > 1:1096727/1‑84 (MQ=255) gCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTg > 2:894073/1‑150 (MQ=255) tCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTggg > 2:217776/1‑150 (MQ=255) | CAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGG > NC_002947/200625‑200922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |