| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,729,285 | T→G | 7.0% | intergenic (+49/‑312) | PP_2390 → / → PP_2392 | LysR family transcriptional regulator/MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,729,285 | 0 | T | G | 7.0% | 143.1 / 3.7 | 57 | intergenic (+49/‑312) | PP_2390/PP_2392 | LysR family transcriptional regulator/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (27/26); new base G (2/2); total (29/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-01 | |||||||||||
GGCCAGCCCAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAGGCAAAG > NC_002947/2729137‑2729430 | ggCCAGCCCAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATc > 2:385837/1‑150 (MQ=255) cAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCGACTTTGGCGGCATCTGCCGccc > 1:544256/1‑150 (MQ=255) cAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCAGGCCTACACGGACATCAACTACCCGCACGGTTGAATACCCGAGCGAGCATGACGTCGATGAATACCCGCAACTTTCGCGGCGTCTGCCGccc > 1:469952/1‑150 (MQ=255) gATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCAccgc > 1:72341/1‑150 (MQ=255) aaGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGa > 2:264117/1‑150 (MQ=255) gCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTg > 2:977365/1‑150 (MQ=255) tGACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCcg < 2:658539/150‑1 (MQ=255) gACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCcgc < 2:302003/150‑1 (MQ=255) cTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCgcgc < 2:288309/150‑1 (MQ=255) tGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCAGATgccgccaaag < 2:762399/117‑5 (MQ=255) tGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCAGATgccgccaaag > 1:762399/1‑113 (MQ=255) ggCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGa > 2:526184/1‑150 (MQ=255) gCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGaa < 1:103037/150‑1 (MQ=255) aGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATAACCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGaa > 2:83789/1‑147 (MQ=255) aGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATAACCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGaa < 1:83789/147‑1 (MQ=255) gTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCTCGCCGTTCCATGAAgtcgt > 1:772713/1‑150 (MQ=255) gTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAgtcgt > 1:97004/1‑150 (MQ=255) cgccgcTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAg > 1:710330/1‑150 (MQ=255) cgccgcTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAg < 1:103039/150‑1 (MQ=255) ccTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCGACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGAc < 2:544256/150‑1 (MQ=255) cTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGAcc > 2:1131211/1‑150 (MQ=255) aaGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCa > 1:777962/1‑123 (MQ=255) aaGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCa < 2:777962/123‑1 (MQ=255) ggACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGGCGCTGACCAGTGAg > 1:322748/1‑150 (MQ=255) aaCATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGc < 1:187103/149‑1 (MQ=255) aTCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCAt > 1:760240/1‑150 (MQ=255) cAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCg < 1:1131211/150‑1 (MQ=255) aCTACCTGTACGGTTGAATACCCGAGTGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGc < 2:901816/150‑1 (MQ=255) ccTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGt < 2:760240/150‑1 (MQ=255) cTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGtt > 2:493142/1‑150 (MQ=255) cGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGTGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGa < 2:595426/150‑1 (MQ=255) ggTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCa < 1:667132/126‑1 (MQ=255) ggTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCa > 2:667132/1‑126 (MQ=255) aTACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCg > 1:1019497/1‑131 (MQ=255) aTACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCg < 2:1019497/131‑1 (MQ=255) aTACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCa > 1:1002244/1‑135 (MQ=255) aTACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCa < 2:1002244/135‑1 (MQ=255) ccGAGCGAGCATGAAGTCGATGAATTCCCGCAACTTTGGCGGCTTCCGCCGCCCGGACGGCCACAGCATATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGaa < 2:422598/150‑1 (MQ=255) ccGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATc < 2:511803/126‑1 (MQ=255) ccGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATc > 1:511803/1‑126 (MQ=255) cgagcgagCATGAAGTCGATGCATACCCGCAACTTTGGCGGTATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTTAAg > 2:327419/1‑150 (MQ=255) gagcACGAAGTCGATGACAATACGCAACTTCGGTGACATCTGCCTTCCGGACGGCCTTAGCAGGTAGAAGCTGCCGCGCCGTTCCATGAAGTCGACAAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCgg > 2:291274/1‑150 (MQ=255) agcATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGc < 1:535299/150‑1 (MQ=255) gcATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCAt < 2:226940/85‑1 (MQ=255) gcATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCAt > 1:226940/1‑85 (MQ=255) cATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGAGAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGCACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAg > 2:131515/1‑150 (MQ=255) aTGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGa < 1:264117/150‑1 (MQ=255) gTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGAc > 1:988055/1‑99 (MQ=255) gTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGAc < 2:988055/99‑1 (MQ=255) tCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTa > 2:590822/1‑150 (MQ=255) cccGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggt < 1:385837/150‑1 (MQ=255) ccGCAACTTTGGCGGCATCTGCCGCCCGGACGGTCACAGCAGATAGAAGCTGCTTCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggtg < 2:261277/150‑1 (MQ=255) ccGCAACTTTGGCGGCATCTGCCGCCCGGACGACCACCGCAGATAGAAGCTACCGCACCGTTCCATGAAGTCGTCGGGAACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggac > 2:238486/1‑148 (MQ=255) cgtccgggcggcAGATGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGCCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggtgg > 1:496871/7‑147 (MQ=255) cgtccgggcggcAGATGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGCCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggtgg < 2:496871/141‑1 (MQ=255) tttGGCGGCATCTGCCGACCGGACGGCCACAGCAGATAGAAGAACCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTNGCGANCCACGTTGAAGTCCNGCAGACAGGTAATGCCGCGGTGGTTCAAg < 1:238486/150‑1 (MQ=255) ggcATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAGgcaaag < 1:493142/150‑1 (MQ=255) | GGCCAGCCCAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTGGCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAGGCAAAG > NC_002947/2729137‑2729430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |