Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,730,938 C→G 8.6% P78A (CCG→GCG)  polB → DNA polymerase II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,730,9380CG 8.6% 135.8 / 4.9 47P78A (CCG→GCG) polBDNA polymerase II
Reads supporting (aligned to +/- strand):  ref base C (23/19);  new base G (2/2);  total (25/22)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01

GCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTT  >  NC_002947/2730794‑2731086
                                                                                                                                                |                                                                                                                                                    
gCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATg                                                                                                                                                 >  1:593887/1‑150 (MQ=255)
   gggCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTc                                                                                                                                              <  1:98179/150‑1 (MQ=255)
      ccGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTCCGAGCATCGGGCGATGCTCgaa                                                                                                                                           <  2:801082/150‑3 (MQ=255)
       cgcgACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGcc                                                                                                                                          <  2:947052/150‑1 (MQ=255)
       cgcgACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGcc                                                                                                                                          <  2:827109/150‑1 (MQ=255)
           aCTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCta                                                                                                                                      <  2:878651/150‑1 (MQ=255)
                  cGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGc                                                                                                                               <  1:402436/150‑1 (MQ=255)
                                       gTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCaa                                                                                                          >  1:598276/1‑150 (MQ=255)
                                             ttCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGag                                                                                                    >  2:717429/1‑150 (MQ=255)
                                             ttCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGag                                                                                                    <  2:593887/150‑1 (MQ=255)
                                                 ttCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGagcagc                                                                                                <  2:70271/150‑1 (MQ=255)
                                                    cTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTc                                                                                             >  1:540663/1‑150 (MQ=255)
                                                     tCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGGGCGATGCTCgaa                                                                                                                                           >  2:1044902/1‑101 (MQ=255)
                                                     tCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGGGCGATGCTCgaa                                                                                                                                           <  1:1044902/103‑3 (MQ=255)
                                                     tCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCt                                                                                            >  2:981961/1‑150 (MQ=255)
                                                       aGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTgc                                                                                          >  2:1001974/1‑150 (MQ=255)
                                                               gCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGcc                                                                                  >  2:645894/1‑150 (MQ=255)
                                                                 cGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCgg                                                                                >  1:1071568/1‑150 (MQ=255)
                                                                  gAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCCCAGCCTGATGCTCGGCCTCCATCCCCGCCCGACTCGCCATTTGATTCAACTGGAGCAGCGTCTGCGCCCGGCCGGt                                                                               >  1:519144/1‑150 (MQ=255)
                                                                  gAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGt                                                                               >  1:912361/1‑150 (MQ=255)
                                                                   aGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTa                                                                              <  2:957319/150‑1 (MQ=255)
                                                                               tgctgcTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCg                                                                  <  1:645894/150‑1 (MQ=255)
                                                                                gctgctGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGa                                                                 <  2:598276/150‑1 (MQ=255)
                                                                                  tgctgGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAgg                                                               >  1:507627/1‑150 (MQ=255)
                                                                                   gctgGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGCGTTTCCGCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGc                                                              <  1:561681/150‑1 (MQ=255)
                                                                                          aaCGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGa                                                           <  2:190424/146‑1 (MQ=255)
                                                                                          aaCGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGa                                                           >  1:190424/1‑146 (MQ=255)
                                                                                          aaCGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATc                                                       >  1:448740/1‑150 (MQ=255)
                                                                                          aaCGAAACCGGGACGAAGCTCAAGCCACTGCCCTTGAAGGACTTCGAGCATCGCCCGATGCCCGGCCTCTATCCCCGCCAGCATCGCCAATTGATGCAACTCGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATc                                                       >  2:491287/1‑150 (MQ=255)
                                                                                           aCGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATcc                                                      >  2:137780/1‑150 (MQ=255)
                                                                                             gAAGCCGGGAAGAAGCGCAAGCCACGGCGCCTTAAGGTCTTCGAGCACCGCAGGACGATCACACTCTCGCCATGCTGGTAGGGCCAATGTATGCAACTTCGGCGGCGTGTGCGCTCTTTCTGTATCGACGTGTTCGAGGCCGATATccac                                                    <  2:125671/150‑3 (MQ=255)
                                                                                               aaCCGGGACGAAGCGCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGgcc                                                  <  1:464202/150‑1 (MQ=255)
                                                                                                   gggACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGccgccg                                              <  2:448740/150‑1 (MQ=255)
                                                                                                      aCGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCACCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAg                                           <  1:937250/150‑1 (MQ=255)
                                                                                                               aaGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTc                                                                   <  1:55335/117‑1 (MQ=255)
                                                                                                               aaGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTc                                                                   >  2:55335/1‑117 (MQ=255)
                                                                                                               aaGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTc                                  >  1:417559/1‑150 (MQ=255)
                                                                                                                    aCTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACATCATGGa                             >  2:631800/1‑150 (MQ=255)
                                                                                                                     cTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCACCTGGAGCAGCGTCTGCGCACTGCCGTTACCGACTTTTTGGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAg                            >  2:678494/1‑150 (MQ=255)
                                                                                                                      tGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAgc                           <  2:540663/150‑1 (MQ=255)
                                                                                                                           cTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGa                                            >  1:339530/1‑128 (MQ=255)
                                                                                                                           cTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGa                                            <  2:339530/128‑1 (MQ=255)
                                                                                                                                   cTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGGGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTGACCTCATGGAGCGCTTCATCGCGGc              >  2:554633/1‑150 (MQ=255)
                                                                                                                                    ttCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCa             >  2:658873/1‑150 (MQ=255)
                                                                                                                                       gAGCATCGGGCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCg          >  2:633198/1‑150 (MQ=255)
                                                                                                                                            tCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCa     >  2:771369/1‑150 (MQ=255)
                                                                                                                                            tCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCa     <  1:137780/150‑1 (MQ=255)
                                                                                                                                               cccGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGtt  >  1:807634/1‑150 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
GCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTT  >  NC_002947/2730794‑2731086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑