| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,841,979 | T→A | 10.8% | intergenic (‑115/+137) | yqhD ← / ← PP_2493 | NAD(P)‑dependent alcohol dehydrogenase/RadC family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,841,979 | 0 | T | A | 10.8% | 98.2 / 3.9 | 37 | intergenic (‑115/+137) | yqhD/PP_2493 | NAD(P)‑dependent alcohol dehydrogenase/RadC family protein |
| Reads supporting (aligned to +/- strand): ref base T (12/21); new base A (2/2); total (14/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.90e-01 | |||||||||||
TTCGCGTGGGGTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCATAGGTTTAC > NC_002947/2841831‑2842127 | ttCGCGTGGGGTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCTTTTAGCACAAAATAGCTGAAGATTGGTTAGAAgcttg < 1:709640/150‑1 (MQ=255) cgTGGGGTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTc < 1:642913/150‑1 (MQ=255) gTGGGGTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCt < 1:323923/150‑1 (MQ=255) gggTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCAAGCTTCTaac < 2:118965/150‑2 (MQ=255) ttGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGc < 1:957082/150‑1 (MQ=255) gtgGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCaa < 1:282363/150‑1 (MQ=255) tgGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAACTAGCTGAAGATTGGTTACAAGCTTGCTTCTAAAGGCAAc > 2:68662/1‑150 (MQ=255) gAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCa > 1:780216/1‑150 (MQ=255) tCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGtt > 1:631641/1‑150 (MQ=255) aTTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGACGATAGTTTCTAAAGGCAACCAAGTTGgtgt > 1:840468/1‑150 (MQ=255) tttggCATAGTTTTCTGTACTCCTTAAATGTATACCTCGCGTATATTTGTTGGTAATATTTTTATTGTAGAAGCTCGTCGGCGCGCATTACGCAACAAATAGCTGAAGATTGTTTAGAAGGTTGTTTCTAAAGGCAATTAAGTTGGtgtg < 2:229965/146‑1 (MQ=255) gCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCAt < 2:919882/150‑1 (MQ=255) tAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATCTTTTTTGGTCCCATTTAAATTGCAGAGGCGCGTAGGCTCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCg > 2:679737/1‑150 (MQ=255) gATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTc < 2:726645/150‑1 (MQ=255) aTTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGACGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCt > 1:456753/1‑150 (MQ=255) tctACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCAtt > 1:739940/1‑150 (MQ=255) cTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTc < 1:554193/150‑1 (MQ=255) ttAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAACGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTcc < 2:206784/150‑1 (MQ=255) aaaGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGa > 1:993983/1‑150 (MQ=255) aaaGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGa < 2:631641/150‑1 (MQ=255) aaGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAg < 1:700042/150‑1 (MQ=255) cAGTCGTATATTTTTTTGTTAAATTTTTAGTGCAGAAGCTCGTCGGCGCGCATTGCGCACCCCCTATCAAAGCATCGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGc < 1:68662/150‑1 (MQ=255) cAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGc < 2:780216/150‑1 (MQ=255) tCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGAGACCGTCAAAGATCATGACAGGGTCGAAGCTTGCTCCTAACGGCAACCAAGTTGGTGTTCAAGTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGtt < 1:252370/150‑1 (MQ=255) tGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCt > 1:1033850/1‑110 (MQ=255) tGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCt < 2:1033850/110‑1 (MQ=255) tcgtcgGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAgg > 1:665711/1‑150 (MQ=255) tcgGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGgtt > 2:467369/1‑150 (MQ=255) tcgGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGgtt > 2:467087/1‑150 (MQ=255) gcATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTTGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTa < 1:679737/150‑1 (MQ=255) gagcAAATAGCTGAAGATTGGTTAGCAGCTTGCTTCTAATGGCATCCAAGGTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACtga < 2:456753/147‑1 (MQ=255) cAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACtgat > 1:84432/1‑148 (MQ=255) cAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACtgat < 2:84432/148‑1 (MQ=255) aTAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAg < 2:665711/150‑1 (MQ=255) tttAGAAGCAAGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACtgat < 2:117549/130‑1 (MQ=255) tttAGAAGCAAGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACtgat > 1:117549/2‑131 (MQ=255) gTTAGAAGCTTGCTTCTAAAGGCAACTACGTTGGTTTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCCCCAAGCAGCGTAAGCTCCTCTCGTTGTCGAGGGTTTTTGCTAGGCACTGATGATAGGGCATCGGGAGTCa < 1:467369/150‑1 (MQ=255) gTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGACGACGAGCCTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCa < 1:467087/150‑1 (MQ=255) ttgcttCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCATAGGTTTAc > 1:384710/1‑150 (MQ=255) | TTCGCGTGGGGTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCATAGGTTTAC > NC_002947/2841831‑2842127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |