Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,965,867 | C→T | 7.7% | G268D (GGC→GAC) | PP_2595 ← | ABC transporter permease/ATP‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,965,867 | 0 | C | T | 7.7% | 147.6 / 2.7 | 52 | G268D (GGC→GAC) | PP_2595 | ABC transporter permease/ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (25/23); new base T (2/2); total (27/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01 |
CTTGGCTGCCAGGATCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTT > NC_002947/2965719‑2966011 | cTTGGCTGCCAGGATCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCCCGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGcc < 1:500419/150‑1 (MQ=255) ttGGCTGCCAGGATCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCa > 2:5287/1‑150 (MQ=255) gCCAGGATCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGcc > 2:907724/1‑150 (MQ=255) ccAGGTGCCGTTCGATTTCCTGCAGCGGGCCAGGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTGGGCCACCCGCCt < 2:444293/150‑1 (MQ=255) cAGGATCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTg > 2:295059/1‑150 (MQ=255) aGGATCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGa > 1:1127880/1‑150 (MQ=255) ggATCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGAt > 2:921865/1‑150 (MQ=255) gATCCGTTCGATTTCCCGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATc < 2:566621/150‑1 (MQ=255) tCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGc < 1:921865/150‑1 (MQ=255) tCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGANCGc < 2:699324/150‑1 (MQ=255) gTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGa > 1:978137/1‑150 (MQ=255) tCGATTTCCTGCAGGTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAAc < 2:117180/150‑1 (MQ=255) tCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAAc < 1:395985/150‑1 (MQ=255) gATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACca > 2:364833/1‑150 (MQ=255) ttCCTGCATCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCCCCGCACCTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAg < 2:847690/150‑1 (MQ=255) cTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGcc > 2:1043276/1‑150 (MQ=255) cTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCggcggc < 1:295059/150‑1 (MQ=255) cATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCcg < 1:628211/140‑1 (MQ=255) cATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCcg > 2:628211/1‑140 (MQ=255) cAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCaaa < 1:364833/150‑1 (MQ=255) gACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTg > 2:213769/1‑150 (MQ=255) aTGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGc > 2:173605/1‑144 (MQ=255) aTGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGc < 1:173605/144‑1 (MQ=255) ggctggcCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACgg < 2:479130/150‑1 (MQ=255) ggctggcCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACgg < 1:1043276/150‑1 (MQ=255) cGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGt < 2:812489/150‑1 (MQ=255) gggCAGCTGGTCGATGAAGCGGCACACAAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAg < 2:456282/148‑1 (MQ=255) tGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAg < 2:642916/113‑1 (MQ=255) tGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAg > 1:642916/1‑113 (MQ=255) gggTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCt < 1:907724/150‑1 (MQ=255) tCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGAc > 2:294711/1‑150 (MQ=255) caccagcaccagTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAAt < 1:213769/150‑1 (MQ=255) caccagcaccagTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAAt > 1:1081004/1‑150 (MQ=255) accagcaccagTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGTCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATg > 2:123656/1‑150 (MQ=255) accagcaccagTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATg > 1:862824/1‑150 (MQ=255) cagcaccagTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGGTGACAGCGAAGCACGAATGAt > 1:730610/1‑150 (MQ=255) agcaccagTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATc < 2:978137/150‑1 (MQ=255) gcaccagTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCa < 2:848149/150‑1 (MQ=255) caccagTGCCACGATCACCGCAAGTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAg > 2:553164/1‑150 (MQ=255) ccagTGCCACGATCACCGCAACTGCGGCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGc > 1:151049/1‑150 (MQ=255) gTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGTCACCCGCCTGATCGCCGAACCACAGGc < 2:363245/63‑1 (MQ=255) gTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGTCACCCGCCTGATCGCCGAACCACAGGc > 1:929654/1‑63 (MQ=255) gTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGTCACCCGCCTGATCGCCGAACCACAGGc > 1:363245/1‑63 (MQ=255) gTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGTCACCCGCCTGATCGCCGAACCACAGGc < 2:929654/63‑1 (MQ=255) aCCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGctgctg > 2:300783/1‑150 (MQ=255) aCCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGctgctg > 1:417977/1‑150 (MQ=255) ccGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCtgctgc > 2:687733/1‑150 (MQ=255) gTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGccc < 2:157878/127‑1 (MQ=255) gTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGccc > 1:157878/1‑127 (MQ=255) tCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTcc > 2:390851/1‑150 (MQ=255) cTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCttt < 2:1081004/150‑1 (MQ=255) cTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCttt < 2:862824/150‑1 (MQ=255) cTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCAGAACTCTGCTGCGCTGGCGCTCCAGGCttt > 1:840913/1‑150 (MQ=255) | CTTGGCTGCCAGGATCCGTTCGATTTCCTGCAGCTGGCCATGGGCCCCGCGCAGGATCTCGACATGGCTGGCCACGTCCTGCAGCGGGTCGATGAAGCGGCACACCAGCACCAGTGCCACGATCACCGCAACTGCGTCCTGCGCTTGGCCACCCGCCTGATCGCCGAACCACAGGCCGGCGGCCACCAACAGCGCGGCAAATGTTGCCTGCACGGCCCAACTGTTGAGCAGTGCTGACAGCGAAGCACGAATGATCAGGCCCATGCCGCTGCTGCGCTGGCGCTCCAGGCTTT > NC_002947/2965719‑2966011 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |