Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,030,147 A→C 13.5% intergenic (+104/‑590) pcaY → / → mgtA aromatic acid chemoreceptor/ATP‑dependent magnesium transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,030,1470AC13.5% 83.9 / 8.2 37intergenic (+104/‑590)pcaY/mgtAaromatic acid chemoreceptor/ATP‑dependent magnesium transporter
Reads supporting (aligned to +/- strand):  ref base A (21/11);  new base C (3/2);  total (24/13)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.10e-01

TGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGA  >  NC_002947/3030012‑3030287
                                                                                                                                       |                                                                                                                                            
tgccGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCtttt                                                                                                                                <  1:621123/147‑1 (MQ=255)
                   gTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAAtt                                                                                                             <  2:167267/150‑1 (MQ=255)
                       aaGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGCGCTCGGGGcggt                                                                                                                                  <  2:255577/125‑4 (MQ=255)
                       aaGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGCGCTCGGGGcggt                                                                                                                                  >  1:255577/1‑122 (MQ=255)
                         ggTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATgg                                                                                                       <  1:285348/150‑1 (MQ=255)
                          gTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGa                                                                                                      >  2:721140/1‑150 (MQ=255)
                          gTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGa                                                                                                      >  1:75497/1‑150 (MQ=255)
                                         ccTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCtcgtcg                                                                                       >  1:819709/1‑150 (MQ=255)
                                          cTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGc                                                                                      >  1:493461/1‑150 (MQ=255)
                                                      ttAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACctct                                                                          >  1:1052366/1‑150 (MQ=255)
                                                           aTAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATAGTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCACTGGACACACTATCTCGTCGCTGCCTGACCTCTTCCGa                                                                     >  1:473293/1‑150 (MQ=255)
                                                                gTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGc                                                                >  2:842177/1‑150 (MQ=255)
                                                                gTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGc                                                                >  1:831558/1‑150 (MQ=255)
                                                                 ttAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCa                                                                                                           <  1:260532/106‑1 (MQ=255)
                                                                 ttAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCa                                                                                                           >  2:260532/1‑106 (MQ=255)
                                                                    aaCTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCATGACCTCTGCCGAATGGCCTgg                                                            >  2:559260/1‑150 (MQ=255)
                                                                     aCTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGt                                                           >  1:146016/1‑150 (MQ=255)
                                                                            tAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCAc                                                    <  2:819709/150‑1 (MQ=255)
                                                                                     ccTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCgg                                           >  1:1076576/1‑150 (MQ=255)
                                                                                            ggTTGACTCCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCg                                    <  2:904687/150‑1 (MQ=255)
                                                                                              ttGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGt                                  >  1:962136/1‑150 (MQ=255)
                                                                                                 aCTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCCCTTGAATCGTAACACCGGTccc                               <  2:831558/150‑1 (MQ=255)
                                                                                                   ttCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCTCTTCACTGAAGACTTCAATGGACACAGTATCTCGTCCCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCgc                             >  2:99900/1‑149 (MQ=255)
                                                                                                           tacGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAg                                                                                                 <  2:1039922/74‑1 (MQ=255)
                                                                                                           tacGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAg                                                                                                 >  1:1039922/1‑74 (MQ=255)
                                                                                                                   aaTAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCaa             >  1:90551/1‑150 (MQ=255)
                                                                                                                     tAAAGTTCTACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTcc                                >  2:485190/1‑129 (MQ=255)
                                                                                                                     tAAAGTTCTACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTcc                                <  1:485190/129‑1 (MQ=255)
                                                                                                                      aaaGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCg                                    >  2:802183/1‑124 (MQ=255)
                                                                                                                      aaaGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCg                                    <  1:802183/124‑1 (MQ=255)
                                                                                                                          ttCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCgcgc      >  2:585845/1‑150 (MQ=255)
                                                                                                                          ttCGACCGCCCAGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCgcgc      >  2:528970/1‑150 (MQ=255)
                                                                                                                              aaggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCaga  >  1:836684/4‑150 (MQ=255)
                                                                                                                               aggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAAcc                                             <  2:474353/104‑1 (MQ=255)
                                                                                                                               aggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAAcc                                             >  1:474353/3‑106 (MQ=255)
                                                                                                                                     cGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCggg                <  2:727168/129‑1 (MQ=255)
                                                                                                                                     cGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCggg                >  1:727168/1‑129 (MQ=255)
                                                                                                                                       |                                                                                                                                            
TGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGA  >  NC_002947/3030012‑3030287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: