| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,162,567 | T→C | 11.1% | intergenic (+471/‑109) | PP_2776 → / → PP_2777 | homocysteine S‑methyltransferase family protein/acyl carrier protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,162,567 | 0 | T | C | 11.1% | 110.1 / 5.8 | 45 | intergenic (+471/‑109) | PP_2776/PP_2777 | homocysteine S‑methyltransferase family protein/acyl carrier protein |
| Reads supporting (aligned to +/- strand): ref base T (19/21); new base C (3/2); total (22/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.49e-01 | |||||||||||
CGCTTCTGGAACTATCGTGCTGTTTCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTGGACAGCGTCATCAGCAG > NC_002947/3162420‑3162713 | cGCTTCTGGAACTATCGTGCTGTTTCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTa > 2:962237/1‑150 (MQ=255) cgatCTGGAACTATCGTGCTGTTTCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAg < 1:1087457/147‑1 (MQ=255) cTTCTGGAACTATCGTGCTGTTTCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAgg < 1:962237/150‑1 (MQ=255) tGGAACTATCGTGCTGTTTCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAATGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGga < 2:639527/150‑1 (MQ=255) tGTTTCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGACAGACAGTAGACGccc > 2:63293/1‑150 (MQ=255) gTTTCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCg > 2:736314/1‑150 (MQ=255) tttCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCCTAAGGGgagag > 1:374765/1‑136 (MQ=255) tttCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCCTAAGGGgagag < 2:374765/137‑2 (MQ=255) ccTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCtttt > 2:645899/1‑150 (MQ=255) ctctCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCttttt > 2:280664/1‑150 (MQ=255) tctcCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCtttttt > 1:144676/1‑150 (MQ=255) ctcCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCttttttt > 1:326572/1‑150 (MQ=255) tcCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTg < 1:660354/150‑1 (MQ=255) cATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGccc < 1:883783/135‑1 (MQ=255) cATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGccc > 2:883783/1‑135 (MQ=255) aTGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTattcatt < 1:205147/150‑1 (MQ=255) tCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTGTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATg > 2:486785/1‑150 (MQ=255) aaaGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCCTAAGGGgaga > 1:90405/1‑73 (MQ=255) aaaGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCCTAAGGGgaga < 2:90405/73‑1 (MQ=255) aaGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCCAAACCGCTTGTTTTGGCCCGATGACTTTATTCATTCAATGCgg < 1:486785/150‑1 (MQ=255) aGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAgggg < 2:287865/67‑1 (MQ=255) aGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAgggg > 1:287865/1‑67 (MQ=255) gggCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTTCCCCCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAg < 1:912302/150‑1 (MQ=255) gggCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAg < 1:63293/150‑1 (MQ=255) cgcTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGaaa < 1:905389/150‑1 (MQ=255) aTTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAaca < 1:422521/145‑1 (MQ=255) aTTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAaca > 2:422521/1‑145 (MQ=255) tcACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGTGAAACACTCAATGaat > 2:570094/1‑150 (MQ=255) aGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGtt < 2:144676/150‑1 (MQ=255) gCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTg < 1:645899/150‑1 (MQ=255) gATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAAtt < 1:736314/150‑1 (MQ=255) aTGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTg > 2:1093510/1‑150 (MQ=255) aTGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTg < 1:231563/150‑1 (MQ=255) cGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTGGACAGc < 2:326572/150‑1 (MQ=255) gTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCaaaa < 2:592737/62‑1 (MQ=255) gTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCaaaa > 1:592737/1‑62 (MQ=255) tGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTGGACAGCGtc < 1:469096/150‑1 (MQ=255) aCTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGa > 1:604026/1‑122 (MQ=255) aCTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCCATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGTCTTTTGTAGGGAAACACTCAATGa < 2:604026/122‑1 (MQ=255) tcCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTGGACAGCGTCATcagc > 1:752570/1‑150 (MQ=255) tcCCCCTAAGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTTTCTTTTTTTTTTTATTCATTCAATGCTGCTTTTGTAGGTAAACACTCTATGATTAATCCGTTGGAATTGGACATCGtcatcatc > 2:287522/1‑148 (MQ=255) cccTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTGGACAGCGTCATcagcag > 2:837474/1‑150 (MQ=255) cccTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTGGACAGCGTCATcagca > 2:111112/1‑149 (MQ=255) cccTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTGGACAGCGTCATcagca < 1:111112/149‑1 (MQ=255) cccTTAGGGGAAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTTTGTATTCAATGCGGCTTTTGTAGAGAAAAATACAATGATTTAACCATCGGAATTGTACAGCGTCATcagcag > 1:351298/1‑150 (MQ=255) | CGCTTCTGGAACTATCGTGCTGTTTCAAGCAATCGATTTTGTCATTTTACGACCCCTCTCCAAGCCCCATTGAGCTGCATGAATCAAAGGTTTCAGGGCGCGCTGGGATTTCTCACAAAAAGCACTGATGGCACGTTGACTCTCCCCTTAGGGGGAGACTTTAGACTCCCGGCCCCCGATAGATCTGGCCTCAAAACAGCTTTTTTTGGCCCGATGACTTTATTCATTCAATGCGGCTTTTGTAGGGAAACACTCAATGAATAATCCGTTGGAATTGGACAGCGTCATCAGCAG > NC_002947/3162420‑3162713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |