| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,442,347 | C→A | 7.0% | L355M (CTG→ATG) | PP_3062 → | tail length determination protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,442,347 | 0 | C | A | 7.0% | 181.3 / 2.8 | 57 | L355M (CTG→ATG) | PP_3062 | tail length determination protein |
| Reads supporting (aligned to +/- strand): ref base C (29/24); new base A (2/2); total (31/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 | |||||||||||
GGCGAACAACTTCAAGAACTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGACCCTGCGCACCGGCGATATCTT > NC_002947/3442205‑3442495 | ggcgAACAACTTCAAGAACTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCAt > 2:183652/1‑150 (MQ=255) gcgAACAACTTCAAGAACTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATg < 1:584271/150‑1 (MQ=255) gAACAACTTCAAGAACTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCg > 2:248197/1‑150 (MQ=255) cAAGAACTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCga < 2:495489/150‑1 (MQ=255) gAACTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAAGACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGagaa < 2:537286/150‑1 (MQ=255) cTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAgac < 2:684913/150‑1 (MQ=255) cTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAgac < 1:359991/150‑1 (MQ=255) cTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACAGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAgac < 2:638829/150‑1 (MQ=255) tggatggaGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAgacc > 2:79199/1‑150 (MQ=255) ggaGAAGATTGGCGCCGGTAATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCAATGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGAccc > 1:197427/1‑150 (MQ=255) gagaAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCg > 2:209226/1‑150 (MQ=255) gaagaTTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCggc > 2:162229/1‑150 (MQ=255) gaTTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCCGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCggccaa > 1:1009211/1‑150 (MQ=255) gATATCAAGAAGGCTTGCAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATc > 1:155892/1‑150 (MQ=255) tatCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCaa < 2:1041883/150‑1 (MQ=255) atCAAGAAGGCTTACAGCGATGTGGGCATTGATTACCCGATGTGATGGAAGGGCGGTCTGCAGAAGGGCATGCCAGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAg < 1:248197/150‑1 (MQ=255) aagaagGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGAc > 2:1084499/1‑150 (MQ=255) agaagGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGGTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACg > 2:244666/1‑150 (MQ=255) gaagGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCATGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGc > 1:935317/1‑150 (MQ=255) gCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCATGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAg < 2:935317/150‑1 (MQ=255) ttACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCAGGGCCAt < 1:349547/93‑1 (MQ=255) ttACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCAGGGCCAt > 2:349547/1‑93 (MQ=255) cAGCGATGTGGGCATTGATTATCAGTTGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCaa < 1:1078201/150‑1 (MQ=255) cAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGACTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCaa > 2:740451/1‑150 (MQ=255) gCGATGTGGGCATTGATTATCCGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGa < 2:1009211/150‑1 (MQ=255) cGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGAt < 1:833542/150‑1 (MQ=255) cGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGAt < 2:834428/150‑1 (MQ=255) cGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGAt < 1:848905/150‑1 (MQ=255) gggCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACaa < 2:839032/150‑1 (MQ=255) ggCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAg < 2:893012/150‑1 (MQ=255) cATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGa > 2:78608/1‑150 (MQ=255) ttGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGGGTCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAg < 1:79199/150‑1 (MQ=255) gatctATCATGCGTCACTGAATCCCGCCCTGAAAAATAGACTGAAACTCATTGTGTCTCCCATGGCCCTGGCCATGCGTTATGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGt < 2:241943/146‑1 (MQ=255) aTCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGAcc > 2:1052135/1‑150 (MQ=255) tCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTcagatc > 1:241943/1‑145 (MQ=255) gTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGaa > 2:627325/1‑150 (MQ=255) tCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAg < 1:780093/102‑1 (MQ=255) tCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAg > 2:780093/1‑102 (MQ=255) aCTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGc > 1:667824/1‑150 (MQ=255) aCTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGc > 1:532576/1‑150 (MQ=255) aTACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAgg > 2:172360/1‑150 (MQ=255) tACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAggc > 1:871813/1‑150 (MQ=255) gAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAgc < 1:209226/150‑1 (MQ=255) aGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGAGTTACGTCGAGGAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAgcgc > 1:301664/1‑150 (MQ=255) ggCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGNAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTg < 1:1084499/150‑1 (MQ=255) cATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGGAGCGCTGga < 1:183652/150‑1 (MQ=255) cATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGga > 1:1048788/1‑150 (MQ=255) gAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGACAAGGCGGCACTGGAAGCGCTGGagaa < 1:996060/150‑1 (MQ=255) cGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGAc > 2:20332/1‑150 (MQ=255) cGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGAc > 2:1055462/1‑150 (MQ=255) ggCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGACCCTGCGCAc < 1:172360/150‑1 (MQ=255) gCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAggc > 2:254728/1‑116 (MQ=255) gCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAggc < 1:254728/116‑1 (MQ=255) tCCATGGTCCATGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGACCCTGCGCACCGGc > 2:103593/1‑150 (MQ=255) cATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGGTCGAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGACCCTGCGCACCGGCGa > 1:690486/1‑150 (MQ=255) cATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGGAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGGGAAGACCCTGCGCACCGGCGa > 2:563157/1‑150 (MQ=255) aTGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGACCCTGCGCACCGGCGat > 2:196149/1‑150 (MQ=255) ccTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGACCCTGCGCACCGGCGATATCtt < 1:563157/150‑1 (MQ=255) ccTGGCCATGCGTTACGTCGAGAAGACCGAAACGACAACGGACCCGCGGTAAAAGGACTCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGACCCTGCGCACCGGCGATATCtt > 1:193526/1‑150 (MQ=255) | GGCGAACAACTTCAAGAACTGGATGGAGAAGATTGGCGCCGGTGATATCAAGAAGGCTTACAGCGATGTGGGCATTGATTATCAGGCGTCACTGAATACCGGCCTGCAGAAGGGCATGAACGTCATTGAGGCGTCCATGGCCCTGGCCATGCGTTACGTCGAGAAGACCGACCCGGCCAAGGCCAAGCAGATCAAGGACGCCCAGGCCAAGATCGACAAGGAAGTCGACCCGGAGAAGGCCAAGGCGGCACTGGAAGCGCTGGAGAAGACCCTGCGCACCGGCGATATCTT > NC_002947/3442205‑3442495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |