Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,536,377 | G→T | 8.3% | intergenic (+48/‑29) | PP_3124 → / → PP_3125 | short chain fatty acid transporter/Cro/CI family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,536,377 | 0 | G | T | 8.3% | 143.4 / 2.1 | 48 | intergenic (+48/‑29) | PP_3124/PP_3125 | short chain fatty acid transporter/Cro/CI family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (22/22); new base T (2/2); total (24/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01 |
TTTCTCGTTCGTGCAATTGCTGGTGCATGTGCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAGGTCGAGCGCGGCCTCAACACGCCC > NC_002947/3536230‑3536525 | tttCTCGTTCGTGCAATTGCTGGTGCATGTGCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCt > 2:266587/1‑150 (MQ=255) tGCAATTGCTGGTGCATGTGCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAATGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTg > 1:1084732/1‑150 (MQ=255) tGCAATTGCTGGTGCATGTGCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTg > 2:288408/1‑150 (MQ=255) cctaTTGCTGGTGCATGTGCCGTTGGTGCTGGTGTTGTTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCGAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTgg < 2:657427/147‑1 (MQ=255) ggTGCATGTGCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTcgc < 1:266587/150‑1 (MQ=255) aTGTGCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCCGTGCTGCCATGTCACAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTcac < 1:688438/150‑1 (MQ=255) tgtgCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTcac > 1:952612/1‑149 (MQ=255) tgtgCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTcac < 2:952612/149‑1 (MQ=255) cGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCt > 1:993475/1‑150 (MQ=255) tGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGa > 1:635339/1‑150 (MQ=255) tGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGa > 1:635337/1‑150 (MQ=255) gCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGAt < 2:945294/150‑1 (MQ=255) tGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTcgc < 2:208833/130‑1 (MQ=255) tGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTcgc > 1:208833/1‑130 (MQ=255) gcgcTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACtgctgc > 2:114637/1‑146 (MQ=255) gcgcTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACtgctgc < 1:114637/146‑1 (MQ=255) aCAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTggg < 1:637106/150‑1 (MQ=255) aaCGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGa > 1:112884/1‑150 (MQ=255) cGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGaaa > 2:1089324/1‑141 (MQ=255) cGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGaaa < 1:1089324/141‑1 (MQ=255) tGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGAcc < 2:653910/150‑1 (MQ=255) aCGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGTTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATTTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGaa < 2:393887/150‑1 (MQ=255) gTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAAt > 1:480054/1‑150 (MQ=255) gTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAAt > 1:3980/1‑150 (MQ=255) cgccAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTg < 1:305852/150‑1 (MQ=255) gccAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTgg < 1:388188/150‑1 (MQ=255) ccAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATcc > 2:1049487/1‑101 (MQ=255) ccAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATcc < 1:1049487/101‑1 (MQ=255) ccAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGc < 1:106913/150‑1 (MQ=255) cagatGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCAGATTGAACCTGCTGCGTAAGAAACTGGGGATGAACCTTGAAATGCTGGCCGAAAAgg > 1:879614/5‑149 (MQ=255) ttGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTg > 2:1120497/1‑150 (MQ=255) aTTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCa > 2:834554/1‑150 (MQ=255) aaGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCACGAc > 1:71609/1‑150 (MQ=255) ccTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGTCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCaaaa > 1:513252/1‑149 (MQ=255) ccTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGTCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCaaaa > 1:513326/1‑149 (MQ=255) ccTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGTCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCaaaa < 2:513252/149‑1 (MQ=255) ccTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGTCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCaaaa < 2:513326/149‑1 (MQ=255) gAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTAc < 2:993475/150‑1 (MQ=255) gCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTg > 2:480375/1‑150 (MQ=255) cGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAg < 2:480054/150‑1 (MQ=255) cGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAg < 2:112884/150‑1 (MQ=255) gTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCCGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAga > 2:60856/1‑149 (MQ=255) cTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAGGTCGAg > 2:365227/1‑150 (MQ=255) tCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAGGTCGAgcgc < 1:288408/150‑1 (MQ=255) gcgTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGAcc > 2:733552/1‑84 (MQ=255) gcgTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGAcc < 1:733552/84‑1 (MQ=255) tCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAGGTCGAGCGCGGCCTCAacac < 2:635337/150‑1 (MQ=255) tCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAGGTCGAGCGCGGCCTCAacac < 2:635339/150‑1 (MQ=255) ggCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTGCCTGTCCAAGGTCGAGCGCGGCCTCAACACGccc < 2:71609/150‑1 (MQ=255) | TTTCTCGTTCGTGCAATTGCTGGTGCATGTGCCGTTGGTGCTGGTGTTGCTGTGGGCGCTGGGTACAACGCTGCAGTACGTGCCGCCAGTGATGCCTTGATTCAAGGCCCCTGGAGGCTTGGCGTCAGCTTTCAGACGCGTATCATGGCTGCCTCAGCCTGGGAAACTCGCGTCACATGTCTATCCGATTGAAACTGCTGCGTAAGAAACTGGGGATGACCCTGGAAATGCTGGCCGAAAAGACTGGCATGACCAAAAGCTACCTGTCCAAGGTCGAGCGCGGCCTCAACACGCCC > NC_002947/3536230‑3536525 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |