Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,615,341 | C→A | 8.1% | A174E (GCA→GAA) | PP_3186 → | transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,615,341 | 0 | C | A | 8.1% | 152.5 / 2.7 | 49 | A174E (GCA→GAA) | PP_3186 | transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (17/28); new base A (2/2); total (19/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.36e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
CTGGAGCTGCATGTGGCACTGGCACCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGG > NC_002947/3615193‑3615490 | ctgGAGCTGCATGTGGCACTGGCACCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCgca < 2:503201/150‑1 (MQ=255) gAGCTGCATGTGGCACTGGCACCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCgcagca > 1:129593/1‑150 (MQ=255) gCTGCATGTGGCACTGGCACCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCagcagc < 2:899194/150‑1 (MQ=255) cATGTGGCACTGGCACCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAgcgcgc < 2:1120798/150‑1 (MQ=255) gcactggcacCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCAc < 1:220988/150‑1 (MQ=255) ctggcacCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTg < 1:903606/150‑1 (MQ=255) gcacCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGAt < 1:114863/150‑1 (MQ=255) cacCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATg > 2:65033/1‑150 (MQ=255) ccTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGaa < 1:921050/150‑1 (MQ=255) cTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAAc > 1:739645/1‑150 (MQ=255) gCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGTATGAACTgg < 1:327231/150‑1 (MQ=255) aTCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCcgcg > 2:864994/1‑150 (MQ=255) tCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCcgcgc > 2:516395/1‑150 (MQ=255) ggCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCgcgcgc > 2:657922/1‑150 (MQ=255) tGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCAt < 1:65033/150‑1 (MQ=255) cGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGAc < 1:673415/150‑1 (MQ=255) tCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGagc > 2:994392/1‑150 (MQ=255) aCCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTc < 1:432557/150‑1 (MQ=255) gCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGaa < 2:467333/150‑1 (MQ=255) gAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTg > 2:1006803/1‑150 (MQ=255) aGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTgg < 2:897579/150‑1 (MQ=255) aGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTgg < 2:811383/150‑1 (MQ=255) gcATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAg < 2:1082657/150‑1 (MQ=255) aTTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAggg > 2:841499/1‑150 (MQ=255) ttGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGa > 1:716952/1‑150 (MQ=255) cGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGAtttt < 1:670628/150‑1 (MQ=255) cTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTgg < 1:190037/150‑1 (MQ=255) ttGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGc < 1:864994/150‑1 (MQ=255) gtattccTACCGCAAGTGTATTCGCGAGAATGCCTGGTAGGGCTACCACGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGACCTGGCCGCGCGCAGCATGACCGTGCAGCGGTTCGCCGAACTGGCAGGGATTTTTAGCCAGGCCTc < 2:529318/145‑1 (MQ=255) aCCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCa > 1:512548/1‑150 (MQ=255) cccTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGc > 2:604391/1‑150 (MQ=255) cTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAgagc > 1:529318/1‑147 (MQ=255) cgcgAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAg > 2:801937/1‑150 (MQ=255) gAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCg < 2:739645/150‑1 (MQ=255) gATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCa > 2:355679/1‑126 (MQ=255) gATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCa < 1:355679/126‑1 (MQ=255) gAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGAAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCa > 1:508177/1‑105 (MQ=255) gAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGAAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCa < 2:508173/105‑1 (MQ=255) gAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGAAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCa < 2:508177/105‑1 (MQ=255) gAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGAAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCa > 1:508173/1‑105 (MQ=255) tATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATg < 2:512548/150‑1 (MQ=255) aTGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATgg < 1:682900/150‑1 (MQ=255) cGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGtt < 1:1006803/150‑1 (MQ=255) ggggAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGAc > 2:607027/1‑71 (MQ=255) ggggAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGAc < 1:607027/71‑1 (MQ=255) gggCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACgg < 1:1091427/150‑1 (MQ=255) ggCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGtt > 2:1063470/1‑143 (MQ=255) ggCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGtt < 1:1063470/143‑1 (MQ=255) gCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGGCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGTGa < 2:129593/150‑1 (MQ=255) ccAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGAttt < 1:25755/123‑1 (MQ=255) ccAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGAttt > 2:25755/1‑123 (MQ=255) cagcagCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGTGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTgg < 1:801937/150‑1 (MQ=255) | CTGGAGCTGCATGTGGCACTGGCACCTTGCGTGATCGGCTATGCCGAAATCGGCCGGACCCTGGCCGAGCGCATTGGCGACTTGAGCAATCACCCCTACCGCGAGTGGATTGGCGAGTATGCCGGGGAGGGCTACCAAGGGGTGGCCGCAGCAGCGCGCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGG > NC_002947/3615193‑3615490 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |