Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,665,425 | C→T | 8.3% | A97V (GCA→GTA) | PP_3229 → | aliphatic sulfonate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,665,425 | 0 | C | T | 8.3% | 129.2 / 3.1 | 48 | A97V (GCA→GTA) | PP_3229 | aliphatic sulfonate‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (23/21); new base T (2/2); total (25/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.85e-01 |
TCTCGAACAGCGCCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCGGTGACCAAAGCCGCTGGCAGCCACTATCTGT > NC_002947/3665279‑3665574 | tctcGAACAGCGCCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAgg > 2:774993/1‑150 (MQ=255) tctcGAACAGCGCCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAgg > 2:345314/1‑150 (MQ=255) tctcGAACAGCGCCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAgg > 2:345110/1‑150 (MQ=255) tcGAACAGCGCCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGgcg > 2:1018780/1‑150 (MQ=255) gAACAGCGCCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGcc < 2:763497/150‑1 (MQ=255) aCAGCGCCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCaa < 2:75399/150‑1 (MQ=255) gcCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGa < 1:1018780/150‑1 (MQ=255) ccTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGAc < 2:1025388/150‑1 (MQ=255) gCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAGCCTTGGAACTGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTc < 1:134708/150‑1 (MQ=255) aTTCGTGTGACCTGGCACTAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGaa > 2:565899/1‑150 (MQ=255) tCGCTTGACGTGGCACGAGTTCCCCCGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCATGCCTGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCCCCCGGGAAGc < 2:278466/150‑1 (MQ=255) gcgTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCAc > 1:741562/1‑150 (MQ=255) gTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGgc < 1:185296/117‑1 (MQ=255) gTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGgc > 2:185296/1‑117 (MQ=255) cTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCAGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTCAGTCCTGGAAGCACCTTCGcc > 1:335497/1‑150 (MQ=255) cTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGAAGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGcc < 1:917272/150‑1 (MQ=255) cACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCTGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGAcc < 2:263641/150‑1 (MQ=255) aGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGccc > 1:559348/1‑150 (MQ=255) ttCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGTAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAg > 2:1024178/1‑150 (MQ=255) ttCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGTAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAg > 2:1024203/1‑150 (MQ=255) ccTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGCTCCTGGt > 2:45132/1‑150 (MQ=255) ccTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGt < 1:345314/150‑1 (MQ=255) ccTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGt < 1:345110/150‑1 (MQ=255) gctgctGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCcggc > 1:276922/1‑150 (MQ=255) ctgctgGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCcggcg < 2:559348/150‑1 (MQ=255) gctgGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGa < 2:177162/150‑1 (MQ=255) tgGAGGCCCTGAGCCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACt > 2:960874/1‑150 (MQ=255) tgGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACt > 2:369777/1‑150 (MQ=255) gCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCg < 2:276922/150‑1 (MQ=255) cTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGTAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGAcc < 1:1024178/150‑1 (MQ=255) cTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGTAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGAcc < 1:1024203/150‑1 (MQ=255) gTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGAc < 1:905355/150‑1 (MQ=255) gTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGAc < 1:484076/150‑1 (MQ=255) tCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGAcc > 2:1001781/1‑150 (MQ=255) cGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCt > 2:920541/1‑150 (MQ=255) tctcGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAg > 1:377286/1‑150 (MQ=255) ggcgtATGTTGCTGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAAACCCTGGCCGACCTCAAAGGCaa < 2:550573/150‑1 (MQ=255) cggACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGc > 1:625684/1‑150 (MQ=255) gTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGtgtg > 1:99369/1‑150 (MQ=255) gCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCg < 2:741562/150‑1 (MQ=255) ccGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCgg < 2:99369/150‑1 (MQ=255) acacCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCGGTGa < 1:1001781/150‑1 (MQ=255) cGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGACTGGGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCGGTGACCaa > 1:619881/1‑150 (MQ=255) gtTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCGGTGACCAAAGCCGCTgg > 1:281681/1‑150 (MQ=255) ttCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACTGCTCAGGCGATCCTGGTGCCTGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCGGTGACCAAAGCCGCTGGc > 2:143209/1‑150 (MQ=255) aCTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCAGACCTCAAAGGCAGGCGTGTGGCGGTGACCAAAGCCGCTGGCAGc < 1:140538/150‑1 (MQ=255) cTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCGGTGACCAAAGCCGCTGGCAGcc > 1:1066342/1‑150 (MQ=255) tCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGAACGCGCGTGCAGCTGTCCAGAGACACTgccagcca > 2:1087164/1‑150 (MQ=255) cAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGGGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCGGTGACCAAAGCCGCTGGCAGCCACTATCTGt < 1:565899/150‑1 (MQ=255) | TCTCGAACAGCGCCTGCAGGCCGAGGGCATTCGCGTGACCTGGCACGAGTTCCCCAGCGGCCTGCCGCTGCTGGAGGCCCTGAACCTTGGCAATGTCGACCTCTCGGCGGACGTTGCCGACACCGTGCCGGTGTTCACTCAGGCGGCAGGCGCCAAGTTGACCTATTTCGCCCGGGAAGCACCTTCGCCGACCGCCCAGGCGATCCTGGTGCCGGCGGACTCACCGCTCAAGACCCTGGCCGACCTCAAAGGCAAGCGTGTGGCGGTGACCAAAGCCGCTGGCAGCCACTATCTGT > NC_002947/3665279‑3665574 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |