Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,755,655 | C→T | 6.4% | F351F (TTC→TTT) | PP_3319 → | GGDEF domain‑containing sensory box protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,755,655 | 0 | C | T | 6.4% | 179.6 / 2.2 | 62 | F351F (TTC→TTT) | PP_3319 | GGDEF domain‑containing sensory box protein |
Reads supporting (aligned to +/- strand): ref base C (30/28); new base T (2/2); total (32/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01 |
CCAGTTGAGTATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACGGACCTGCTT > NC_002947/3755511‑3755802 | ccAGTTGAGTATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATc > 1:992653/1‑150 (MQ=255) aGTATCAATGCCAGCCATGACGGGCTGACGGCTTTACTTAACCGCCGGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAAc < 1:624711/150‑1 (MQ=255) tATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGa > 1:931485/1‑150 (MQ=255) aTCAATGCCAGCCATGACGGGCTGACGGGTTTTCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGAc < 1:964997/150‑1 (MQ=255) aTGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCCGGATGGATTCAAATCCATCAACGACTCCa > 2:90265/1‑150 (MQ=255) gccagccaTGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATc < 2:816125/150‑1 (MQ=255) agccaTGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCggg > 2:437507/1‑150 (MQ=255) ccaTGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGcc > 2:749489/1‑149 (MQ=255) gACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCactac > 1:666570/1‑150 (MQ=255) cGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACtt < 1:988569/150‑1 (MQ=255) gCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCgg < 2:974465/150‑1 (MQ=255) cTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGc < 1:409599/150‑1 (MQ=255) tGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCg > 1:382154/1‑150 (MQ=255) tGACGGGTTTGCTTAACCGCCTGTCTCTCGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCg > 1:869887/1‑150 (MQ=255) gACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTAGATTGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGa < 1:749489/150‑1 (MQ=255) gCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCt > 1:400139/1‑150 (MQ=255) gCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGAATGGATGCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGCTCAAGTGCt > 2:402118/1‑150 (MQ=255) cTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTg > 2:394529/1‑150 (MQ=255) cGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAg < 2:382154/150‑1 (MQ=255) cGCCTGGCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAg < 1:354836/150‑1 (MQ=255) gCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTTGAATCCATccag < 1:446107/107‑4 (MQ=255) gCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTTGAATCCATccag > 2:446107/1‑104 (MQ=255) tGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTgg < 1:394529/150‑1 (MQ=255) gTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGc < 2:1059996/150‑1 (MQ=255) ctGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAg > 2:1000236/1‑150 (MQ=255) tGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTg > 2:428815/1‑131 (MQ=255) tGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTg < 1:428815/131‑1 (MQ=255) tGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAgc > 2:406855/1‑150 (MQ=255) gAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAgcgc < 2:931485/150‑1 (MQ=255) aaGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCt < 2:161816/150‑1 (MQ=255) aGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCtt < 1:1000236/150‑1 (MQ=255) aGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCtt < 2:22073/150‑1 (MQ=255) aCCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGa < 1:280394/150‑1 (MQ=255) cGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAAc > 1:732918/1‑90 (MQ=255) cGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAAc < 2:732918/90‑1 (MQ=255) gCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCca > 2:828000/1‑150 (MQ=255) ttGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTAGATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCcagc > 2:598160/1‑150 (MQ=255) tCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAgg < 1:437507/150‑1 (MQ=255) ggtCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGtccgtccg < 2:164945/149‑1 (MQ=255) tCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAACTCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACcgtcgt < 1:402118/150‑1 (MQ=255) aaCGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATACATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGc > 1:923347/1‑150 (MQ=255) cGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTAATGGGATCAAGTGCTGATCGAGGTGGCACAGCGATTGACCCCGAAGTCGTGTGCGGCTGTTACCGTCGTGCGt > 1:748607/1‑150 (MQ=255) aGTTCAACTGGCGCTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATggg < 1:478502/150‑1 (MQ=255) gTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGa < 1:188853/109‑1 (MQ=255) gTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGa > 2:188853/1‑109 (MQ=255) ttCAACTGGCGGTCATATACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACGGTCGTGCGTATGggcg > 2:568452/1‑150 (MQ=255) cTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGAt < 2:938213/150‑1 (MQ=255) ggTCATGTACATCGACCTGGATGGATTCAACTCCATCAACGACTACGGCGGAAACAACGCCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGtt < 2:869887/150‑1 (MQ=255) gTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGt > 2:23379/1‑150 (MQ=255) tACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCTCCTACGAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGCGTTTGTCGtt > 2:705704/1‑150 (MQ=255) cATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTct < 2:400139/150‑1 (MQ=255) aTCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTctg > 1:743351/1‑150 (MQ=255) ttgttgatggatTTGAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGggcg > 2:771499/6‑126 (MQ=255) ttgttgatggatTTGAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGggcg < 1:771499/121‑1 (MQ=255) aCCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCAAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGa > 2:562839/1‑150 (MQ=255) ccTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGAc < 2:992653/150‑1 (MQ=255) cTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACg > 2:310590/1‑150 (MQ=255) cTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCAGATCGCGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACg > 2:283213/1‑150 (MQ=255) gatggatTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACGGAc > 2:97910/1‑150 (MQ=255) atggatTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCGGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGttt < 2:28197/131‑1 (MQ=255) atggatTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGttt > 1:28197/1‑131 (MQ=255) ttCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACGGACCTGCtt > 1:71600/1‑150 (MQ=255) | CCAGTTGAGTATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACGGACCTGCTT > NC_002947/3755511‑3755802 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |