Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,791,453 | C→G | 9.8% | A285G (GCC→GGC) | PP_3353 → | sulfatase‑modifying protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,791,453 | 0 | C | G | 9.8% | 147.6 / 8.3 | 51 | A285G (GCC→GGC) | PP_3353 | sulfatase‑modifying protein |
Reads supporting (aligned to +/- strand): ref base C (26/20); new base G (2/3); total (28/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.47e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.34e-01 |
TTTTACCGGTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATGACGAC > NC_002947/3791304‑3791591 | ttttACCGGTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAggcccggc < 1:790377/150‑1 (MQ=255) cGGTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGGCCGGGCCTGAg < 1:5127/150‑1 (MQ=255) ggTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGGCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGt > 2:461441/1‑150 (MQ=255) gTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTg > 1:551723/1‑150 (MQ=255) aTCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAg > 1:666913/1‑150 (MQ=255) aTCGCCCGTGGATTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCCCGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAg > 2:122356/1‑150 (MQ=255) gCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCtt > 2:682178/1‑150 (MQ=255) ccGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTcc > 2:212499/1‑149 (MQ=255) ccGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTcc > 2:212119/1‑149 (MQ=255) cGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGa > 2:1066207/1‑150 (MQ=255) tGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGAcc < 2:449807/150‑1 (MQ=255) gTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCCCAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCgg > 1:852503/1‑150 (MQ=255) ttCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCa < 1:757641/147‑1 (MQ=255) ttCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCa > 2:757641/1‑147 (MQ=255) cAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGt < 1:1066207/150‑1 (MQ=255) ccTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCgtgccggtgccgct < 1:18163/150‑3 (MQ=255) ccTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGt > 1:826899/1‑150 (MQ=255) ttCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACATCTTCTACCCTTCAGACCCCGGCGTGCCGGTGGCGGTAATc > 2:1030248/1‑150 (MQ=255) cggcAATGTCTGGGGGCTGTCTCGCACGGGCGAGCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCTGTGGCGGTAATCAAAGGCGGCTc < 2:423841/150‑1 (MQ=255) tGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCAATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCt < 2:67867/150‑1 (MQ=255) tCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGa > 1:957504/1‑84 (MQ=255) tCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGa < 2:957504/84‑1 (MQ=255) gAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGCAATCAAAGGCGGCTCGCACCTGTGTTcg > 1:734690/1‑150 (MQ=255) gCTGACTCGCACGGGCTAGCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCACAGGCGGCTCGCACCTGTGTTcggc < 1:386720/150‑1 (MQ=255) aCTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGAc < 1:368447/150‑1 (MQ=255) gCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCt < 1:259570/150‑1 (MQ=255) gggCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCt < 1:451896/63‑1 (MQ=255) ggacTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCt > 2:451896/4‑63 (MQ=255) cTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCGCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATgcg > 2:214637/1‑150 (MQ=255) tATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATgcgc > 1:417554/1‑150 (MQ=255) tATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGCAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATgcgc < 2:734690/150‑1 (MQ=255) ggccaggccaTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAggcggc < 2:915054/113‑1 (MQ=255) ggccaggccaTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAggcggc > 1:915054/1‑113 (MQ=255) aTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTAcc > 2:242146/1‑141 (MQ=255) aTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTAcc < 1:242146/141‑1 (MQ=255) aTGACGCACAGCGCGACGCCAAGCTCGACCCCTAAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCgg > 1:533201/1‑150 (MQ=255) gACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATAAAAGGCGGCTCGCACCTGTGTTCCGCGGACCTCGTCATGCGCTACCGCCCCTCGGCa < 2:852503/150‑1 (MQ=255) aCGCACAGCGCGACGCCAAGCTCGACCCCTCAGGGCCGGGCCTGAgg > 2:72677/1‑46 (MQ=25) aCGCACAGCGCGACGCCAAGCTCGACCCCTCAGGGCCGGGCCTGAgg < 1:72677/47‑2 (MQ=25) aCGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCGTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCAc < 1:1030248/150‑1 (MQ=255) aCGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCAc > 2:1068643/1‑150 (MQ=255) acaGCGCGACGCCAAGCTCGACCCCTCATGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCca > 2:581489/1‑150 (MQ=255) acaGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCca > 2:1131368/1‑150 (MQ=255) acaGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCca < 2:826899/150‑1 (MQ=255) gCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCcagccgcagccg > 1:434867/1‑150 (MQ=255) cAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGgt < 1:461441/150‑1 (MQ=255) cTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTc < 1:732606/150‑1 (MQ=255) tcacTCAGGGCCGGGCCTGAGGGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGCGTTCCGCCCAGAGCAGCACGCACTAGCTCCCCTCGGCACGCCAGCGGCCGCAGGTGTTAATgac > 2:1030566/4‑150 (MQ=255) ccccTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATgac < 1:1089702/150‑1 (MQ=255) ccTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTAACGCGCCTCGGCACGCCAGCCGCAGCCGGTGTTCATgacga > 1:337222/1‑150 (MQ=255) acTCAGGGCCGGGCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATgacga < 2:39872/149‑1 (MQ=255) cTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATgacgac > 1:1081339/1‑150 (MQ=255) | TTTTACCGGTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATGACGAC > NC_002947/3791304‑3791591 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |