Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,816,552 A→T 6.2% S104S (TCT→TCA cpxR ← two‑component system regulator CpxR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,816,5520AT 6.2% 199.8 / 2.9 64S104S (TCT→TCAcpxRtwo‑component system regulator CpxR
Reads supporting (aligned to +/- strand):  ref base A (26/34);  new base T (2/2);  total (28/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

GCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGGAGATGCCTGG  >  NC_002947/3816403‑3816698
                                                                                                                                                     |                                                                                                                                                  
gcgcTCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCCGCTCACCGGga                                                                                                                                                    <  1:501318/150‑1 (MQ=255)
      cAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTg                                                                                                                                              <  2:113661/150‑1 (MQ=255)
       aGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCAAGCTTTGCACCCATCAGGTATGGCTGCACGCGACGCAGTAGTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTgg                                                                                                                                             <  1:351375/150‑1 (MQ=255)
         cgcgcCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCTCCCGGTGAGCTggtg                                                                                                                                           <  1:498258/150‑3 (MQ=255)
            gcCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTg                                                                                                                                        <  1:642305/150‑1 (MQ=255)
                cgcgCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGca                                                                                                                                    <  2:747327/150‑1 (MQ=255)
                         ccGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCAt                                                                                                                           >  1:1012752/1‑150 (MQ=255)
                          cGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCAt                                                                                                                           >  1:54510/1‑149 (MQ=255)
                          cGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCAt                                                                                                                           <  2:54510/149‑1 (MQ=255)
                           ggCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCg                                                                                                                         <  1:782569/150‑1 (MQ=255)
                              cacaTTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGcc                                                                                                                      <  1:284290/150‑1 (MQ=255)
                                    ttCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGc                                                                                                                >  1:283524/1‑150 (MQ=255)
                                             ccAATGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCg                                                                                                       <  1:441867/150‑1 (MQ=255)
                                              cACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCgg                                                                                                      >  1:1090139/1‑150 (MQ=255)
                                                 tGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCaa                                                                                                   >  1:984387/1‑150 (MQ=255)
                                                     tACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCg                                                                                               <  2:832926/150‑1 (MQ=255)
                                                       ccTGCTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCTCAGCTCCAGGCCGGCAATGCGGt                                                                                             <  2:550837/150‑1 (MQ=255)
                                                              aGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGAtgtt                                                                                      <  1:400902/150‑1 (MQ=255)
                                                              aGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGAtgtt                                                                                      >  2:171401/1‑150 (MQ=255)
                                                                gTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGAtgttgt                                                                                    <  2:1012752/150‑1 (MQ=255)
                                                                    cTCGGGCGCGCTGGTTTCACCCAACAACTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCAcc                                                                                >  1:996477/1‑150 (MQ=255)
                                                                        ggCGCGCTGGTTTCCCCCATCCGGCATGTCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGt                                                                            <  2:559724/150‑1 (MQ=255)
                                                                         gcgcgcTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTg                                                                           <  2:984387/150‑1 (MQ=255)
                                                                            cgcTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTg                                                                        <  1:854701/150‑1 (MQ=255)
                                                                               tGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTca                                                                     <  1:724355/150‑1 (MQ=255)
                                                                               tGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTca                                                                     >  1:36588/1‑150 (MQ=255)
                                                                                   ttCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTcagcag                                                                 <  2:283524/150‑1 (MQ=255)
                                                                                   ttCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTcagcag                                                                 >  1:221647/1‑150 (MQ=255)
                                                                                    tCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTcagcagc                                                                >  1:1060000/1‑150 (MQ=255)
                                                                                    tCACCCATCAGGTATGGCGGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCCGCCCCCAGCTCCAGCCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTcagcagc                                                                <  1:993283/150‑1 (MQ=255)
                                                                                      aCCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCt                                                                         <  1:876921/139‑1 (MQ=255)
                                                                                      aCCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCt                                                                         >  2:876921/1‑139 (MQ=255)
                                                                                         cATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCAc                                                           <  2:638234/150‑1 (MQ=255)
                                                                                          aTCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGc                                                                                                                <  1:716116/96‑1 (MQ=255)
                                                                                          aTCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGc                                                                                                                >  2:716116/1‑96 (MQ=255)
                                                                                          aTCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGAt                                                                                         <  1:799039/119‑1 (MQ=255)
                                                                                          aTCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGAt                                                                                         >  2:799039/1‑119 (MQ=255)
                                                                                          aTCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCAcc                                                          >  2:293636/1‑150 (MQ=255)
                                                                                             aGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCGCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGc                                                       >  2:591835/1‑150 (MQ=255)
                                                                                               gTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCAc                                                     >  1:172615/1‑150 (MQ=255)
                                                                                               gTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCAc                                                     <  2:36588/150‑1 (MQ=255)
                                                                                                       gCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTAc                                             <  1:92981/150‑1 (MQ=255)
                                                                                                       gCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTAc                                             <  1:200022/150‑1 (MQ=255)
                                                                                                         aCGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGt                                           <  1:1115579/150‑1 (MQ=255)
                                                                                                                gCAATATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTACTGTCAGCAGCAGCACCGGCACCTGACTACGTgcacgca                                    >  2:775907/1‑150 (MQ=255)
                                                                                                                     aTTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACgcgg                               <  2:599268/150‑1 (MQ=255)
                                                                                                                         cccGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCtt                                                                                                                                         <  2:623444/40‑1 (MQ=255)
                                                                                                                         cccGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCtt                                                                                                                                         >  1:623444/1‑40 (MQ=255)
                                                                                                                          ccGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCgcag                          >  1:927133/1‑150 (MQ=255)
                                                                                                                            gCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCgcagca                        >  1:650246/1‑150 (MQ=255)
                                                                                                                                  gTGCCACCAGCTCACCTGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGa                  >  2:186098/1‑150 (MQ=255)
                                                                                                                                  gTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGa                  >  2:537650/1‑150 (MQ=255)
                                                                                                                                  ccaagcccaGCTCTCCCGGTGAGCTGGTCTTGGGCGCATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGa                  >  1:486700/7‑150 (MQ=255)
                                                                                                                                       accaGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCACAGCAGACGTTGCAGTCACCGCGTGCTGTCTTTAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCg             <  1:135208/150‑1 (MQ=255)
                                                                                                                                        ccaGCTCTCCCGGTGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGt                                           <  1:668703/119‑1 (MQ=255)
                                                                                                                                        ccaGCTCTCCCGGTGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGt                                           >  2:668703/1‑119 (MQ=255)
                                                                                                                                        ccaGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTcagcagca                                                               >  2:35375/1‑99 (MQ=255)
                                                                                                                                        ccaGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTcagcagca                                                               <  1:35375/99‑1 (MQ=255)
                                                                                                                                         caGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGga           >  1:127641/1‑150 (MQ=255)
                                                                                                                                            cTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGGAGAt        <  1:602237/150‑1 (MQ=255)
                                                                                                                                             tCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGGAGATg       >  2:715919/1‑150 (MQ=255)
                                                                                                                                               aCCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGt                                           >  1:929305/1‑112 (MQ=255)
                                                                                                                                               aCCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGt                                           <  2:929305/112‑1 (MQ=255)
                                                                                                                                                ccGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGGAGATGCCt    <  1:269704/150‑1 (MQ=255)
                                                                                                                                                  gggAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGGAGATGCCTgg  <  1:537650/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
GCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGGAGATGCCTGG  >  NC_002947/3816403‑3816698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: