Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,982,582 C→T 11.1% C19C (TGC→TGT PP_3510 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,982,5820CT11.1% 89.3 / 3.3 36C19C (TGC→TGTPP_3510hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (14/18);  new base T (2/2);  total (16/20)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.41e-01

CCTGGATTGGGGCCTGCAGATGCAGGTGTGGGACCCGTTCGGCAACCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAGCAAGAGGCCGATAAAGCCGCTGCAGTGGCGGGCGA  >  NC_002947/3982439‑3982731
                                                                                                                                               |                                                                                                                                                     
ccTGGATTGGGGCCTGCAGATGCAGGTGTGGGACCCGTTCGGCAACCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGAcc                                                                                                                                                 <  2:1004147/150‑1 (MQ=255)
  tGGATTGGGGCCTGCAGATGCAGGTGTGGGACCCGTTCGGCAACCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCgc                                                                                                                                               >  2:861994/1‑149 (MQ=255)
             cTGCAGATGCAGGTGTGGGACCCGTTCGGCAACCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGaaa                                                                                                                                    >  1:706713/1‑150 (MQ=255)
             cTGCAGATGCAGGTGTGGGACCCGTTCGGCAACCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGAGAAATGGGCCGCCTGGCGCGCGAGTTGGTCTCGTGCTGGACCGACGCCTGCGaaa                                                                                                                                    >  2:10168/1‑150 (MQ=255)
               gCAGATGCAGGTGTGGGACCCGTTCGGCAACCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAAcc                                                                                                                                  <  1:794497/150‑1 (MQ=255)
                                 cccGTTCGGCAACCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTc                                                                                                                <  1:766063/150‑1 (MQ=255)
                                            aCCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTg                                                                                                     <  2:655427/150‑1 (MQ=255)
                                                ccTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCtt                                                                                                 >  2:351026/1‑150 (MQ=255)
                                                   gcgcTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTAcc                                                                                              >  1:644568/1‑150 (MQ=255)
                                                           gCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCt                                                                                      <  2:206522/150‑1 (MQ=255)
                                                            ccAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTc                                                                                     <  2:249049/150‑1 (MQ=255)
                                                                     cGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAg                                                                            <  1:10168/150‑1 (MQ=255)
                                                                       aTGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAg                                                                            <  1:262747/148‑1 (MQ=255)
                                                                       aTGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAg                                                                            >  2:262747/1‑148 (MQ=255)
                                                                          aCGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACtt                                                                       >  1:406454/1‑150 (MQ=255)
                                                                          aCGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACtt                                                                       >  2:401138/1‑150 (MQ=255)
                                                                              ggCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTTGTCGCGTGCCTGACCGTCTCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCg                                                                   <  1:247710/150‑1 (MQ=255)
                                                                               gCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCgg                                                                  >  1:826506/1‑150 (MQ=255)
                                                                                             gCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTAtt                                                    <  2:192399/150‑1 (MQ=255)
                                                                                                 tGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCt                                                <  1:401138/150‑1 (MQ=255)
                                                                                                   ggCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTgg                                              <  2:522343/150‑1 (MQ=255)
                                                                                                   ggCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTgg                                              <  2:158829/150‑1 (MQ=255)
                                                                                                   ggCAAACGCGAAATGGGCCGCCGGGAGCGGGAGTTGGTCGCGGGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTgg                                              <  2:483800/150‑1 (MQ=255)
                                                                                                   ctcAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTAGTCCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTgg                                              <  1:365978/148‑1 (MQ=255)
                                                                                                      aaaCGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCGGAGGACTTTCCGGGCAGCCTGCGTATTACCTgggag                                           >  2:365978/1‑148 (MQ=255)
                                                                                                            gAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAg                                     >  1:276778/1‑150 (MQ=255)
                                                                                                                tGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAGCAag                                 >  2:857579/1‑150 (MQ=255)
                                                                                                                     cgccTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGACAAGGCGGTATATGTCGCTATTTATACTATTACCCTTCTTCTCTACCTTTGTGACTGTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAGCAAGAGGcc                            <  2:679534/150‑1 (MQ=255)
                                                                                                                      gccTGGAGCGGGAGTTGGTCGCGTGTCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTgg                                              >  2:912807/1‑131 (MQ=255)
                                                                                                                      gccTGGAGCGGGAGTTGGTCGCGTGTCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTgg                                              >  2:912846/1‑131 (MQ=255)
                                                                                                                      gccTGGAGCGGGAGTTGGTCGCGTGTCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTgg                                              <  1:912846/131‑1 (MQ=255)
                                                                                                                      gccTGGAGCGGGAGTTGGTCGCGTGTCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTgg                                              <  1:912807/131‑1 (MQ=255)
                                                                                                                           gAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAGCAAGAGGCCGATaaa                      <  2:644568/150‑1 (MQ=255)
                                                                                                                                 gAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAGCAAGAGGCCGATAAAGCCGCt                <  2:138849/150‑1 (MQ=255)
                                                                                                                                   gTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAGCAAGAGGCCGATAAAGCCGCTGc              >  1:429006/1‑150 (MQ=255)
                                                                                                                                        tCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAGCAAGAGGCCGATAAAGCCGCTGCAGTgg         >  2:146795/1‑150 (MQ=255)
                                                                                                                                               ccTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGCGCAGCCTGCGTATTACCTGGGTATTCGAGCAAGAGGCCGATAAAGCCGCTGCAGTGGCGGGCGa  >  2:874523/1‑150 (MQ=255)
                                                                                                                                               |                                                                                                                                                     
CCTGGATTGGGGCCTGCAGATGCAGGTGTGGGACCCGTTCGGCAACCGCCTGCGCTTTTGCCAGCAGATCGATGACGAGGCCAACCCGTGAAGGCATTGGGCAAACGCGAAATGGGCCGCCTGGAGCGGGAGTTGGTCGCGTGCCTGACCGACGCCTGCGAAACCGCCAAGGCGGAGATTGTCGGCTTCAGTTGGCTTACCCATCGCCTCGACCCCGAGGACTTTCCGGGCAGCCTGCGTATTACCTGGGTATTCGAGCAAGAGGCCGATAAAGCCGCTGCAGTGGCGGGCGA  >  NC_002947/3982439‑3982731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: