Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,004,894 G→T 10.2% W272C (TGG→TGT PP_3533 → ornithine cyclodeaminase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,004,8940GT10.2% 110.7 / 4.0 39W272C (TGG→TGTPP_3533ornithine cyclodeaminase
Reads supporting (aligned to +/- strand):  ref base G (18/17);  new base T (2/2);  total (20/19)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.22e-01

AACGCCGTGGGTGGTGACTGCCCTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGATCGACCT  >  NC_002947/4004745‑4005043
                                                                                                                                                     |                                                                                                                                                       
aaCGCCGTGGGTGGTGACTGCCCTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTgg                                                                                                                                                         <  1:201614/150‑1 (MQ=255)
           tggtgACTGCCCTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTgcg                                                                                                                                              >  2:316523/1‑150 (MQ=255)
                    cccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGTCGCGTGCTGCGCGga                                                                                                                                          >  1:558224/1‑145 (MQ=255)
                    cccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGTCGCGTGCTGCGCGga                                                                                                                                          <  2:558224/145‑1 (MQ=255)
                    cccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGTCGCGTGCTGCGCGga                                                                                                                                          >  1:8350/1‑145 (MQ=255)
                    cccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGTCGCGTGCTGCGCGga                                                                                                                                          <  2:8350/145‑1 (MQ=255)
                     ccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGcgcg                                                                                                                                            >  1:202655/1‑142 (MQ=255)
                     ccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGcgcg                                                                                                                                            <  2:202655/142‑1 (MQ=255)
                        ggCAAAAGCGAGCCGCACGCCGATGGGCTGCGCCGCGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGCGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAg                                                                                                                                 <  2:430268/150‑1 (MQ=255)
                        ggCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAg                                                                                                                                 <  2:924112/150‑1 (MQ=255)
                           aaaaCCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGgc                                                                                                                              <  1:316523/150‑1 (MQ=255)
                                cGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTACCGAAGGTGAGCTGGAGCACCGTCCGGCGTTCTTTCCGTTTGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCa                                                                                                                         >  2:125713/1‑150 (MQ=255)
                                                  gctgcGCACCGAGAGAGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCAc                                                                                                     >  2:831748/1‑150 (MQ=255)
                                                    tgcGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTg                                                                                                   >  2:849307/1‑150 (MQ=255)
                                                            gcgcgGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTattcgat                                                                                           >  2:252361/1‑150 (MQ=255)
                                                                  gtgtTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCa                                                                                                      <  2:136301/133‑1 (MQ=255)
                                                                  gtgtTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCa                                                                                                      >  1:136301/1‑133 (MQ=255)
                                                                  gtgtTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTg                                                                                     >  1:486759/1‑150 (MQ=255)
                                                                     ttCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGc                                                                                  >  1:75485/1‑150 (MQ=255)
                                                                           gAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTatt                                                                                               >  2:890830/1‑131 (MQ=255)
                                                                           gAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTatt                                                                                               <  1:890830/131‑1 (MQ=255)
                                                                                     cacaAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGAtt                                                                  >  2:342698/1‑150 (MQ=255)
                                                                                      acaAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTa                                                                 >  1:926300/1‑150 (MQ=255)
                                                                                        aaaCCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTaca                                                               <  2:486759/150‑1 (MQ=255)
                                                                                                       gTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGgtacg                                                <  1:831748/150‑1 (MQ=255)
                                                                                                        tGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGgtacgt                                               <  1:4450/150‑1 (MQ=255)
                                                                                                         gagaTCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGgtacgta                                              <  2:100272/150‑1 (MQ=255)
                                                                                                            aTCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGtacta                                           <  1:342698/150‑1 (MQ=255)
                                                                                                             tCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGACTCCGCCCTCGAGGATTACACCGTACTACGGTACGtactac                                          >  2:1029564/1‑150 (MQ=255)
                                                                                                                 gcagcTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTgg                                                                                    >  2:202698/1‑104 (MQ=255)
                                                                                                                 gcagcTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTgg                                                                                    <  1:202698/104‑1 (MQ=255)
                                                                                                                      tGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCg                                 >  2:325070/1‑150 (MQ=255)
                                                                                                                              gACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAgcgc                         <  2:926300/150‑1 (MQ=255)
                                                                                                                               aCTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGcgcg                        <  1:849307/150‑1 (MQ=255)
                                                                                                                                cTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCgg                       <  1:325070/150‑1 (MQ=255)
                                                                                                                                 tttCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCggg                      >  2:21880/1‑150 (MQ=255)
                                                                                                                                        tggtCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCa               >  2:918349/1‑150 (MQ=255)
                                                                                                                                              aCCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGa         >  1:709554/1‑150 (MQ=255)
                                                                                                                                              aCCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCAGCATTGCCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGa         <  1:290666/150‑1 (MQ=255)
                                                                                                                                                  gtgGCGAGTGCTGCGCGAAGAAACCGAGGGCCGCCAAAGCGACAGCCCAGCGTAGGTGAGTCTGGTTCG‑‑GGCCTGCCGCCTCGAAGATTTCACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGATCGa     <  1:252361/150‑1 (MQ=255)
                                                                                                                                                     gcgcGTGCTGCGCGCAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGCATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGATCGACCt  <  2:934561/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                       
AACGCCGTGGGTGGTGACTGCCCTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAGCCAGGTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGATCGACCT  >  NC_002947/4004745‑4005043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: