Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,004,894 | G→T | 10.2% | W272C (TGG→TGT) | PP_3533 → | ornithine cyclodeaminase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,004,894 | 0 | G | T | 10.2% | 110.7 / 4.0 | 39 | W272C (TGG→TGT) | PP_3533 | ornithine cyclodeaminase |
Reads supporting (aligned to +/- strand): ref base G (18/17); new base T (2/2); total (20/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.22e-01 |
AACGCCGTGGGTGGTGACTGCCCTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGATCGACCT > NC_002947/4004745‑4005043 | aaCGCCGTGGGTGGTGACTGCCCTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTgg < 1:201614/150‑1 (MQ=255) tggtgACTGCCCTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTgcg > 2:316523/1‑150 (MQ=255) cccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGTCGCGTGCTGCGCGga > 1:558224/1‑145 (MQ=255) cccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGTCGCGTGCTGCGCGga < 2:558224/145‑1 (MQ=255) cccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGTCGCGTGCTGCGCGga > 1:8350/1‑145 (MQ=255) cccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGTCGCGTGCTGCGCGga < 2:8350/145‑1 (MQ=255) ccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGcgcg > 1:202655/1‑142 (MQ=255) ccTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGcgcg < 2:202655/142‑1 (MQ=255) ggCAAAAGCGAGCCGCACGCCGATGGGCTGCGCCGCGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGCGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAg < 2:430268/150‑1 (MQ=255) ggCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAg < 2:924112/150‑1 (MQ=255) aaaaCCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGgc < 1:316523/150‑1 (MQ=255) cGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTACCGAAGGTGAGCTGGAGCACCGTCCGGCGTTCTTTCCGTTTGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCa > 2:125713/1‑150 (MQ=255) gctgcGCACCGAGAGAGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCAc > 2:831748/1‑150 (MQ=255) tgcGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTg > 2:849307/1‑150 (MQ=255) gcgcgGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTattcgat > 2:252361/1‑150 (MQ=255) gtgtTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCa < 2:136301/133‑1 (MQ=255) gtgtTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCa > 1:136301/1‑133 (MQ=255) gtgtTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTg > 1:486759/1‑150 (MQ=255) ttCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGc > 1:75485/1‑150 (MQ=255) gAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTatt > 2:890830/1‑131 (MQ=255) gAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTatt < 1:890830/131‑1 (MQ=255) cacaAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGAtt > 2:342698/1‑150 (MQ=255) acaAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTa > 1:926300/1‑150 (MQ=255) aaaCCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTaca < 2:486759/150‑1 (MQ=255) gTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGgtacg < 1:831748/150‑1 (MQ=255) tGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGgtacgt < 1:4450/150‑1 (MQ=255) gagaTCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGgtacgta < 2:100272/150‑1 (MQ=255) aTCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGtacta < 1:342698/150‑1 (MQ=255) tCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGACTCCGCCCTCGAGGATTACACCGTACTACGGTACGtactac > 2:1029564/1‑150 (MQ=255) gcagcTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTgg > 2:202698/1‑104 (MQ=255) gcagcTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTgg < 1:202698/104‑1 (MQ=255) tGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCg > 2:325070/1‑150 (MQ=255) gACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAgcgc < 2:926300/150‑1 (MQ=255) aCTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGcgcg < 1:849307/150‑1 (MQ=255) cTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCgg < 1:325070/150‑1 (MQ=255) tttCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCggg > 2:21880/1‑150 (MQ=255) tggtCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCa > 2:918349/1‑150 (MQ=255) aCCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGa > 1:709554/1‑150 (MQ=255) aCCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCAGCATTGCCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGa < 1:290666/150‑1 (MQ=255) gtgGCGAGTGCTGCGCGAAGAAACCGAGGGCCGCCAAAGCGACAGCCCAGCGTAGGTGAGTCTGGTTCG‑‑GGCCTGCCGCCTCGAAGATTTCACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGATCGa < 1:252361/150‑1 (MQ=255) gcgcGTGCTGCGCGCAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGCATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGATCGACCt < 2:934561/150‑1 (MQ=255) | AACGCCGTGGGTGGTGACTGCCCTGGCAAAACCGAGCTGCACGCCGATGTGCTGCGCAACGCGCGGGTGTTCGTCGAGTACGAGCCACAAACCCGTATCGAAGGTGAGATCCAGCAGCTGCCGGCGGACTTTCCGGTGGTCGACCTGTGGCGCGTGCTGCGCGGAGAAACCGAGGGCCGCCAAAGCGACAG‑CCAG‑GTCACTGTATTCGATTCGGTGGGCTTCGCCCTCGAAGATTACACCGTACTACGGTACGTACTACAGCAAGCCGAAAAGCGCGGGATGGGCACCAAGATCGACCT > NC_002947/4004745‑4005043 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |